RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 GPR78Q96P69 363 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 DPY30Q9C005 99 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 RBBP6Q7Z6E9 1792 aaKnown RBP11.8□□□□□ -0.52
MSH6-204ENST00000445503 SHROOM3Q8TF72 1996 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 A0A0U1RQS6 177 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 UBFD1O14562 309 aaKnown RBP11.8□□□□□ -0.52
MSH6-204ENST00000445503 TOR1BO14657 336 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 GABRDO14764 452 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 KDM1AO60341 852 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 ATP6V1G1O75348 118 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 SH3BGRLO75368 114 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 SEC22BO75396 215 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 ECI2O75521 394 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 RSL1D1O76021 490 aaKnown RBP11.8□□□□□ -0.52
MSH6-204ENST00000445503 CST1P01037 141 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 ZNF182P17025 639 aaPredicted RBP11.8□□□□□ -0.52
MSH6-204ENST00000445503 ELK4P28324 431 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 TAF10Q12962 218 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 LAPTM5Q13571 262 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 MYBPC3Q14896 1274 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 PGS1Q32NB8 556 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 FBXL22Q6P050 247 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 C8orf59Q8N0T1 100 aaPredicted RBP11.8□□□□□ -0.52
MSH6-204ENST00000445503 RANBP9Q96S59 729 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 FBXO44Q9H4M3 255 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 ARMC7Q9H6L4 198 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 DAPK2Q9UIK4 370 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 USP22Q9UPT9 525 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 ACTL7AQ9Y615 435 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 AQP12BA6NM10 295 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 IQCF5A8MTL0 148 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 B4GAT1O43505 415 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 SH3BP5O60239 455 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 GSNP06396 782 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 CYP4B1P13584 511 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 RHOQP17081 205 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 ALDH4A1P30038 563 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 MTHFRP42898 656 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 LEPRP48357 1165 aaKnown RBP11.79□□□□□ -0.52
MSH6-204ENST00000445503 PIGFQ07326 219 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 SEMA3BQ13214 749 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 ARHGEF7Q14155 803 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 PPP4R4Q6NUP7 873 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 AQP12AQ8IXF9 295 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 OR6K2Q8NGY2 324 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 GAB3Q8WWW8 586 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 LZICQ8WZA0 190 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 RUBCNLQ9H714 662 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 CCM2LQ9NUG4 571 aaPredicted RBP11.79□□□□□ -0.52
MSH6-204ENST00000445503 CMTM6Q9NX76 183 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 IFT80Q9P2H3 777 aaPredicted RBP11.79□□□□□ -0.52
MSH6-204ENST00000445503 EIF3LQ9Y262 564 aaKnown RBP11.79□□□□□ -0.52
MSH6-204ENST00000445503 GIT1Q9Y2X7 761 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 PCDHB5Q9Y5E4 795 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.79□□□□□ -0.52
MSH6-204ENST00000445503 BOLA2-SMG1P6H3BVE0 249 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 RHOCP08134 193 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 CTPS1P17812 591 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 UGT1A1P22309 533 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 UGT1A4P22310 534 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 PSMB9P28065 219 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 MC4RP32245 332 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 UGT1A3P35503 534 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 UGT1A5P35504 534 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 TMED10P49755 219 aaKnown RBP11.79□□□□□ -0.52
MSH6-204ENST00000445503 ZNF177Q13360 481 aaPredicted RBP11.79□□□□□ -0.52
MSH6-204ENST00000445503 DDX39BQ13838 428 aaKnown RBP11.79□□□□□ -0.52
MSH6-204ENST00000445503 NFE2Q16621 373 aaPredicted RBP11.79□□□□□ -0.52
MSH6-204ENST00000445503 BROXQ5VW32 411 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 OGFOD2Q6N063 350 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 TOP1MTQ969P6 601 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 MFSD1Q9H3U5 465 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 INTS7Q9NVH2 962 aaKnown RBP11.79□□□□□ -0.52
MSH6-204ENST00000445503 UBA2Q9UBT2 640 aaPredicted RBP11.79□□□□□ -0.52
MSH6-204ENST00000445503 CFAP99D6REC4 459 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 KPNA6O60684 536 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 FGF1P05230 155 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 ITGB1P05556 798 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 CAPN1P07384 714 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 RAD23AP54725 363 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 MAP2K5Q13163 448 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 TUSC3Q13454 348 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 AP5B1Q2VPB7 878 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 LINGO4Q6UY18 593 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 AGMOQ6ZNB7 445 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 UTS2BQ765I0 119 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 GALNT5Q7Z7M9 940 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 ARL10Q8N8L6 244 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 RSPH1Q8WYR4 309 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 NCSTNQ92542 709 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 FAM120BQ96EK7 910 aaKnown RBP11.79□□□□□ -0.52
MSH6-204ENST00000445503 SMIM14Q96QK8 99 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 RIBC2Q9H4K1 309 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 OLAHQ9NV23 265 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 LMCD1Q9NZU5 365 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 ACTR3BQ9P1U1 418 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 INVSQ9Y283 1065 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 VPS4BO75351 444 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 PENKP01210 267 aaPredicted RBP11.79□□□□□ -0.52
MSH6-204ENST00000445503 GPIP06744 558 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms