RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 MGAT4DA6NG13 374 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 B2RBV5 119 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 RGS5O15539 181 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 IFI35P80217 286 aaPredicted RBP12.85□□□□□ -0.35
PTCH1-207ENST00000429896 ENPP7Q6UWV6 458 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 KRT78Q8N1N4 520 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 PGAP3Q96FM1 320 aaPredicted RBP12.85□□□□□ -0.35
PTCH1-207ENST00000429896 RIOK2Q9BVS4 552 aaKnown RBP12.85□□□□□ -0.35
PTCH1-207ENST00000429896 DPEP2Q9H4A9 486 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 MKL2Q9ULH7 1088 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 ARL5AQ9Y689 179 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 CAPN1P07384 714 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 COL13A1Q5TAT6 717 aaPredicted RBP12.85□□□□□ -0.35
PTCH1-207ENST00000429896 IRAK1BP1Q5VVH5 260 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 GPR149Q86SP6 731 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 TMEM245Q9H330 911 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 PADI4Q9UM07 663 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 MMP20O60882 483 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 ITGA2BP08514 1039 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 HOXA9P31269 272 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 STK19P49842 368 aaPredicted RBP12.85□□□□□ -0.35
PTCH1-207ENST00000429896 CHST15Q7LFX5 561 aaPredicted RBP12.85□□□□□ -0.35
PTCH1-207ENST00000429896 LRIG1Q96JA1 1093 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 ZNF641Q96N77 438 aaPredicted RBP12.85□□□□□ -0.35
PTCH1-207ENST00000429896 CDH19Q9H159 772 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 OR2AG1Q9H205 316 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 MTO1Q9Y2Z2 717 aaKnown RBP12.85□□□□□ -0.35
PTCH1-207ENST00000429896 ANKDD1BA6NHY2 528 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 TULP3O75386 442 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 OXTRP30559 389 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 GNPDA1P46926 289 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 TRIP10Q15642 601 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 RNASEH2BQ5TBB1 312 aaKnown RBP12.84□□□□□ -0.35
PTCH1-207ENST00000429896 TMEM220Q6QAJ8 160 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 C16orf89Q6UX73 402 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 ERN2Q76MJ5 926 aaKnown RBP12.84□□□□□ -0.35
PTCH1-207ENST00000429896 ZMIZ2Q8NF64 920 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 SLC35B2Q8TB61 432 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 HGH1Q9BTY7 390 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 UBE2ZQ9H832 354 aaPredicted RBP12.84□□□□□ -0.35
PTCH1-207ENST00000429896 MID1IP1Q9NPA3 183 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 LTBP1Q14766 1721 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 TCRBV9S1A1TA0A576 114 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 SLCO1B7G3V0H7 640 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 CYP51A1Q16850 503 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 PACS1Q6VY07 963 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 COMMD2Q86X83 199 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 FBRSQ9HAH7 460 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 LMAN1LQ9HAT1 526 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 TRBV23OR9-2A0A075B6M9 112 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 TRIM13O60858 407 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 LEFTY1O75610 366 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 CLK1P49759 484 aaKnown RBP12.84□□□□□ -0.35
PTCH1-207ENST00000429896 RPL26P61254 145 aaKnown RBP12.84□□□□□ -0.35
PTCH1-207ENST00000429896 SIRPB2Q5JXA9 342 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 ANKRD22Q5VYY1 191 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 UBE2R2Q712K3 238 aaPredicted RBP12.84□□□□□ -0.35
PTCH1-207ENST00000429896 SNX20Q7Z614 316 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 UXS1Q8NBZ7 420 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 ZSCAN5AQ9BUG6 496 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 GTPBP2Q9BX10 602 aaKnown RBP12.84□□□□□ -0.35
PTCH1-207ENST00000429896 ACSS3Q9H6R3 686 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 RPL26L1Q9UNX3 145 aaKnown RBP12.84□□□□□ -0.35
PTCH1-207ENST00000429896 TTC34A8MYJ7 566 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 CCL22O00626 93 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 KBTBD6Q86V97 674 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 RERGQ96A58 199 aaPredicted RBP12.84□□□□□ -0.35
PTCH1-207ENST00000429896 ASB2Q96Q27 587 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 TTLL2Q9BWV7 592 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 MYH7BA7E2Y1 1941 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 ENO4A6NNW6 628 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 TNFP01375 233 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 ZNF805Q5CZA5 627 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 FOXR1Q6PIV2 292 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 TRIT1Q9H3H1 467 aaKnown RBP12.84□□□□□ -0.35
PTCH1-207ENST00000429896 DNAJC28Q9NX36 388 aa12.84□□□□□ -0.35
PTCH1-207ENST00000429896 PFKFB4Q16877 469 aa12.83□□□□□ -0.36
PTCH1-207ENST00000429896 HEATR4Q86WZ0 1026 aa12.83□□□□□ -0.36
PTCH1-207ENST00000429896 CPXM2Q8N436 756 aa12.83□□□□□ -0.36
PTCH1-207ENST00000429896 MAGEB18Q96M61 343 aa12.83□□□□□ -0.36
PTCH1-207ENST00000429896 USP3Q9Y6I4 520 aa12.83□□□□□ -0.36
PTCH1-207ENST00000429896 NUMBLQ9Y6R0 609 aa12.83□□□□□ -0.36
PTCH1-207ENST00000429896 HPGDP15428 266 aa12.83□□□□□ -0.36
PTCH1-207ENST00000429896 NMBRP28336 390 aa12.83□□□□□ -0.36
PTCH1-207ENST00000429896 CD70P32970 193 aa12.83□□□□□ -0.36
PTCH1-207ENST00000429896 IRF8Q02556 426 aa12.83□□□□□ -0.36
PTCH1-207ENST00000429896 RPL6Q02878 288 aaKnown RBP12.83□□□□□ -0.36
PTCH1-207ENST00000429896 SNAP47Q5SQN1 464 aa12.83□□□□□ -0.36
PTCH1-207ENST00000429896 HECTD2Q5U5R9 776 aa12.83□□□□□ -0.36
PTCH1-207ENST00000429896 SEL1L3Q68CR1 1132 aa12.83□□□□□ -0.36
PTCH1-207ENST00000429896 KYAT3Q6YP21 454 aaKnown RBP12.83□□□□□ -0.36
PTCH1-207ENST00000429896 CFAP206Q8IYR0 622 aa12.83□□□□□ -0.36
PTCH1-207ENST00000429896 MTERF3Q96E29 417 aa12.83□□□□□ -0.36
PTCH1-207ENST00000429896 RHOJQ9H4E5 214 aa12.83□□□□□ -0.36
PTCH1-207ENST00000429896 RPS6KB2Q9UBS0 482 aa12.83□□□□□ -0.36
PTCH1-207ENST00000429896 KLF15Q9UIH9 416 aa12.83□□□□□ -0.36
PTCH1-207ENST00000429896 PRDM4Q9UKN5 801 aa12.83□□□□□ -0.36
PTCH1-207ENST00000429896 SOBPA7XYQ1 873 aa12.83□□□□□ -0.36
PTCH1-207ENST00000429896 ZNF682O95780 498 aa12.83□□□□□ -0.36
PTCH1-207ENST00000429896 TNNI3P19429 210 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms