RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 AFMIDQ63HM1 303 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 CWF19L1Q69YN2 538 aaKnown RBP8.32□□□□□ -1.08
CD44-208ENST00000428726 KLC3Q6P597 504 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 FBXL19Q6PCT2 694 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 SPPL2BQ8TCT7 592 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 SEPHS2Q99611 448 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 EGFL8Q99944 293 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 GRIP2Q9C0E4 1043 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 DNAJC15Q9Y5T4 150 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 LCHNA4D1U4 455 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 RGSL1A5PLK6 1076 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 MAGEA13PA6NCF6 341 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 HIDE1A8MVS5 230 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 WASH4PA8MWX3 477 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 TARM1B6A8C7 271 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 FOXD2O60548 495 aaPredicted RBP8.32□□□□□ -1.08
CD44-208ENST00000428726 PRAMEF11O60813 436 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 CDK14O94921 469 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 ATP5F1P24539 256 aaPredicted RBP8.32□□□□□ -1.08
CD44-208ENST00000428726 PBLDP30039 288 aaPredicted RBP8.32□□□□□ -1.08
CD44-208ENST00000428726 HSPA7P48741 367 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 NEK2P51955 445 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 HSPA14Q0VDF9 509 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 MESP2Q0VG99 397 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 PRKAA1Q13131 559 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 PTK2BQ14289 1009 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 IL23RQ5VWK5 629 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 METTL21CQ5VZV1 264 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 CYHR1Q6ZMK1 362 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 ARHGAP18Q8N392 663 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 KYQ8NBH2 561 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 ZNF784Q8NCA9 323 aaPredicted RBP8.32□□□□□ -1.08
CD44-208ENST00000428726 RIN3Q8TB24 985 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 GATA6Q92908 595 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 SCAMP4Q969E2 229 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 FUBP3Q96I24 572 aaKnown RBP eCLIP8.32□□□□□ -1.08
CD44-208ENST00000428726 IGSF21Q96ID5 467 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 C8orf48Q96LL4 319 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 ZBTB26Q9HCK0 441 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 S100A14Q9HCY8 104 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 RHBDL2Q9NX52 303 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 CXXC1Q9P0U4 656 aaPredicted RBP8.32□□□□□ -1.08
CD44-208ENST00000428726 ANGPTL2Q9UKU9 493 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 FNDC1Q4ZHG4 1894 aaPredicted RBP8.31□□□□□ -1.08
CD44-208ENST00000428726 GRXCR1A8MXD5 290 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 ECI2O75521 394 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 PARNO95453 639 aaKnown RBP8.31□□□□□ -1.08
CD44-208ENST00000428726 CCL5P13501 91 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 HK2P52789 917 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 MED21Q13503 144 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 DDX39BQ13838 428 aaKnown RBP8.31□□□□□ -1.08
CD44-208ENST00000428726 AP5B1Q2VPB7 878 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 KIAA0930Q6ICG6 404 aaPredicted RBP8.31□□□□□ -1.08
CD44-208ENST00000428726 GAREM2Q75VX8 874 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 RETREG3Q86VR2 466 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 ZSWIM9Q86XI8 627 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 SPPL2CQ8IUH8 684 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 SFTPA1Q8IWL2 248 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 LILRA2Q8N149 483 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 FBXW8Q8N3Y1 598 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 LRTOMTQ8WZ04 291 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 CIB1Q99828 191 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 PKP2Q99959 881 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 MRPL57Q9BQC6 102 aaKnown RBP8.31□□□□□ -1.08
CD44-208ENST00000428726 PRKD2Q9BZL6 878 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 CIPCQ9C0C6 399 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 TUBB1Q9H4B7 451 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 NSUN3Q9H649 340 aaKnown RBP8.31□□□□□ -1.08
CD44-208ENST00000428726 ZDHHC6Q9H6R6 413 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 ABCB8Q9NUT2 735 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 ZNF212Q9UDV6 495 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 VPS51Q9UID3 782 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 PRR23AA6NEV1 266 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 PRORSD1PA6NEY8 169 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 TCAF2A6NFQ2 919 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 NEDD8-MDP1E9PL57 170 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 TMEM189-UBE2V1I3L0A0 370 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 PSMD12O00232 456 aaPredicted RBP8.31□□□□□ -1.08
CD44-208ENST00000428726 FBP2O00757 339 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 CCNT2O60583 730 aaKnown RBP8.31□□□□□ -1.08
CD44-208ENST00000428726 LRATO95237 230 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 CD160O95971 181 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 UGT2B4P06133 528 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 GSNP06396 782 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 GRIA3P42263 894 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 METAP1P53582 386 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 MSLNQ13421 630 aaPredicted RBP8.31□□□□□ -1.08
CD44-208ENST00000428726 LAMB3Q13751 1172 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 TIGD2Q4W5G0 525 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 BNC2Q6ZN30 1099 aaPredicted RBP8.31□□□□□ -1.08
CD44-208ENST00000428726 GALNT10Q86SR1 603 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 TRIM74Q86UV6 250 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 MYO1HQ8N1T3 1032 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 FBXO39Q8N4B4 442 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 TBCDQ9BTW9 1192 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 KLHL4Q9C0H6 718 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 GSTO2Q9H4Y5 243 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 ASB8Q9H765 288 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 CAAP1Q9H8G2 361 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 LTB4R2Q9NPC1 389 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms