RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 DR1Q01658 176 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 PDAP1Q13442 181 aaKnown RBP12.36□□□□□ -0.43
SKA1-203ENST00000417656 ITGA9Q13797 1035 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 ELOCQ15369 112 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 JAMLQ86YT9 394 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 GALNT13Q8IUC8 556 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 PPHLN1Q8NEY8 458 aaKnown RBP12.36□□□□□ -0.43
SKA1-203ENST00000417656 OR4C6Q8NH72 309 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 CCL4L1Q8NHW4 92 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 GDAP1Q8TB36 358 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 ZNF592Q92610 1267 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 CNDP2Q96KP4 475 aaKnown RBP12.36□□□□□ -0.43
SKA1-203ENST00000417656 RUNDC3BQ96NL0 473 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 OR2M4Q96R27 311 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 RANBP9Q96S59 729 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 KRT12Q99456 494 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 OR2AG1Q9H205 316 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 UGT1A7Q9HAW7 530 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 UGT1A10Q9HAW8 530 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 UGT1A8Q9HAW9 530 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 NLE1Q9NVX2 485 aaPredicted RBP12.36□□□□□ -0.43
SKA1-203ENST00000417656 SMOXQ9NWM0 555 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 NLGN3Q9NZ94 848 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 VPS18Q9P253 973 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 ATXN10Q9UBB4 475 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 TCAF1Q9Y4C2 921 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 CSNK1G3Q9Y6M4 447 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 BPTFQ12830 3046 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 DNAH14Q0VDD8 3507 aa12.36□□□□□ -0.43
SKA1-203ENST00000417656 NEMP2A6NFY4 417 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 LMO7DNF2Z398 122 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 GOLGA8MH3BSY2 632 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 TTI1O43156 1089 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 DNAJC6O75061 913 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 URI1O94763 535 aaPredicted RBP12.35□□□□□ -0.43
SKA1-203ENST00000417656 ANXA6P08133 673 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 MYF5P13349 255 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 CEACAM1P13688 526 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 ZNF8P17098 575 aaPredicted RBP12.35□□□□□ -0.43
SKA1-203ENST00000417656 MGAT1P26572 445 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 ADCY8P40145 1251 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 HADHAP40939 763 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 ARSDP51689 593 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 SIM1P81133 766 aaPredicted RBP12.35□□□□□ -0.43
SKA1-203ENST00000417656 CDK16Q00536 496 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 NFATC2Q13469 925 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 PEX6Q13608 980 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 TRIP6Q15654 476 aaKnown RBP12.35□□□□□ -0.43
SKA1-203ENST00000417656 PROX2Q3B8N5 592 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 PYCR3Q53H96 274 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 GPRC6AQ5T6X5 926 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 CRTC3Q6UUV7 619 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 ADGRG6Q86SQ4 1221 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 DDHD1Q8NEL9 900 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 SPATA4Q8NEY3 305 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 DTX3LQ8TDB6 740 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 STYXQ8WUJ0 223 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 SCARF2Q96GP6 870 aaPredicted RBP12.35□□□□□ -0.43
SKA1-203ENST00000417656 ZNF778Q96MU6 729 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 CDC6Q99741 560 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 ASB8Q9H765 288 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 SYBUQ9NX95 663 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 SLC2A6Q9UGQ3 507 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 CRLS1Q9UJA2 301 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 APPL1Q9UKG1 709 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 DOLKQ9UPQ8 538 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 PRKAB1Q9Y478 270 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 PLEKHM1Q9Y4G2 1056 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 GPSM3Q9Y4H4 160 aa12.35□□□□□ -0.43
SKA1-203ENST00000417656 ZFC3H1O60293 1989 aaKnown RBP12.34□□□□□ -0.43
SKA1-203ENST00000417656 ARID1BQ8NFD5 2236 aaPredicted RBP12.34□□□□□ -0.43
SKA1-203ENST00000417656 OR51F1A6NGY5 319 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 DNALI1O14645 258 aaPredicted RBP12.34□□□□□ -0.43
SKA1-203ENST00000417656 YY2O15391 372 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 NUAK1O60285 661 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 LDOC1O95751 146 aaPredicted RBP12.34□□□□□ -0.43
SKA1-203ENST00000417656 PRSS56P0CW18 603 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 ITGALP20701 1170 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 ADRA1DP25100 572 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 AK4P27144 223 aaPredicted RBP12.34□□□□□ -0.43
SKA1-203ENST00000417656 MRPS25P82663 173 aaKnown RBP12.34□□□□□ -0.43
SKA1-203ENST00000417656 ILF3Q12906 894 aaKnown RBP eCLIP12.34□□□□□ -0.43
SKA1-203ENST00000417656 DNAJC3Q13217 504 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 DHX34Q14147 1143 aaKnown RBP12.34□□□□□ -0.43
SKA1-203ENST00000417656 PLA2G4EQ3MJ16 856 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 C6orf132Q5T0Z8 1188 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 TSTD2Q5T7W7 516 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 RNASEH2BQ5TBB1 312 aaKnown RBP12.34□□□□□ -0.43
SKA1-203ENST00000417656 IZUMO3Q5VZ72 239 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 ZCCHC8Q6NZY4 707 aaKnown RBP12.34□□□□□ -0.43
SKA1-203ENST00000417656 LRRC8BQ6P9F7 803 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 SYDE1Q6ZW31 735 aaPredicted RBP12.34□□□□□ -0.43
SKA1-203ENST00000417656 TAF8Q7Z7C8 310 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 GLRX5Q86SX6 157 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 CAND1Q86VP6 1230 aaKnown RBP12.34□□□□□ -0.43
SKA1-203ENST00000417656 GKN2Q86XP6 184 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 PPIL6Q8IXY8 311 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 NAT8LQ8N9F0 302 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 KYQ8NBH2 561 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 OR13J1Q8NGT2 312 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms