RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 CD82P27701 267 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 RBMS1P29558 406 aaKnown RBP6.33□□□□□ -1.4
USP54-202ENST00000413442 ADRA1AP35348 466 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 SPAM1P38567 509 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 UCNP55089 124 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 CTBSQ01459 385 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 PLOD1Q02809 727 aaPredicted RBP6.33□□□□□ -1.4
USP54-202ENST00000413442 DMPKQ09013 629 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 CDH17Q12864 832 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 C1orf61Q13536 156 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 LONRF2Q1L5Z9 754 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 SIRPB2Q5JXA9 342 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 TPRG1LQ5T0D9 272 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 TMEM164Q5U3C3 297 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 AGAP9Q5VTM2 703 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 KCTD11Q693B1 232 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 KLHL35Q6PF15 583 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 IYDQ6PHW0 289 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 XKR5Q6UX68 686 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 LRRC69Q6ZNQ3 347 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 ARHGEF18Q6ZSZ5 1173 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 GLT6D1Q7Z4J2 308 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 LRRTM4Q86VH4 590 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 BPHLQ86WA6 291 aaPredicted RBP6.33□□□□□ -1.4
USP54-202ENST00000413442 SLC13A5Q86YT5 568 aaPredicted RBP6.33□□□□□ -1.4
USP54-202ENST00000413442 RBFAQ8N0V3 343 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 LSM14AQ8ND56 463 aaKnown RBP6.33□□□□□ -1.4
USP54-202ENST00000413442 GPR26Q8NDV2 337 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 SPATA22Q8NHS9 363 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 ZNF398Q8TD17 642 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 ZDHHC1Q8WTX9 485 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 STYXQ8WUJ0 223 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 SCAMP4Q969E2 229 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 WDR24Q96S15 920 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 CMKLR1Q99788 373 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 CCDC3Q9BQI4 270 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 ZPBPQ9BS86 351 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 CCM2Q9BSQ5 444 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 RAB33BQ9H082 229 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 LRRN3Q9H3W5 708 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 VPS37BQ9H9H4 285 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 IL26Q9NPH9 171 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 THSD1Q9NS62 852 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 TAAR2Q9P1P5 351 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 PAK5Q9P286 719 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 PDP2Q9P2J9 529 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 GULP1Q9UBP9 304 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 ACSL6Q9UKU0 697 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 ACSL5Q9ULC5 683 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 CNOT6Q9ULM6 557 aaKnown RBP6.33□□□□□ -1.4
USP54-202ENST00000413442 ZNF148Q9UQR1 794 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 GPSM3Q9Y4H4 160 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 PCDHGA7Q9Y5G6 932 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 AK5Q9Y6K8 562 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 U3KQA8 63 aa6.33□□□□□ -1.4
USP54-202ENST00000413442 ARHGEF17Q96PE2 2063 aaPredicted RBP6.33□□□□□ -1.4
USP54-202ENST00000413442 GLYATL1P3A0A0U1RQE8 302 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 C1QTNF9BB2RNN3 333 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 PFDN6O15212 129 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 NVLO15381 856 aaKnown RBP6.32□□□□□ -1.4
USP54-202ENST00000413442 LIASO43766 372 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 NOBOXO60393 691 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 SUN1O94901 812 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 AP2A1O95782 977 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 FUCA1P04066 466 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 C1QTNF9P0C862 333 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 F3P13726 295 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 ZNF7P17097 686 aaPredicted RBP6.32□□□□□ -1.4
USP54-202ENST00000413442 ADRA1DP25100 572 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 NDUFS1P28331 727 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 ACTR1BP42025 376 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 HALP42357 657 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 GNPDA1P46926 289 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 MARCKSL1P49006 195 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 NPY2RP49146 381 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 ACTR1AP61163 376 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 B4GALNT1Q00973 533 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 SEMG2Q02383 582 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 ZFP36L1Q07352 338 aaKnown RBP6.32□□□□□ -1.4
USP54-202ENST00000413442 GALNT3Q14435 633 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 OASLQ15646 514 aaKnown RBP6.32□□□□□ -1.4
USP54-202ENST00000413442 PCSK7Q16549 785 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 GUSBP11Q6P575 273 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 WDR74Q6RFH5 385 aaPredicted RBP6.32□□□□□ -1.4
USP54-202ENST00000413442 CERS6Q6ZMG9 384 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 SNX20Q7Z614 316 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 NRROSQ86YC3 692 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 CCNJLQ8IV13 435 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 CARFQ8N187 725 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 SFRP1Q8N474 314 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 TTC30BQ8N4P2 665 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 ZNF248Q8NDW4 579 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 DDHD1Q8NEL9 900 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 IPMKQ8NFU5 416 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 OR4D9Q8NGE8 314 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 OR10G6Q8NH81 332 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 SNIP1Q8TAD8 396 aaKnown RBP6.32□□□□□ -1.4
USP54-202ENST00000413442 PTCD2Q8WV60 388 aaKnown RBP6.32□□□□□ -1.4
USP54-202ENST00000413442 ZCCHC14Q8WYQ9 949 aaKnown RBP6.32□□□□□ -1.4
USP54-202ENST00000413442 EID2BQ96D98 161 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms