RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 CEP290O15078 2479 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 WASHC2AQ641Q2 1341 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 A0A096LPK6 155 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 A0A0J9YXV3 536 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 A0A0U1RQS6 177 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 ENO4A6NNW6 628 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 MPTX1A8MV57 137 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 RAB27BO00194 218 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 WNT9BO14905 357 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 MAGEC1O60732 1142 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 CDC123O75794 336 aaPredicted RBP-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 STAM2O75886 525 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 LYPD3O95274 346 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 THEGLP0DJG4 465 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 MSH3P20585 1137 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 HNF1AP20823 631 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 PIGAP37287 484 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 ETV5P41161 510 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 GSTM5P46439 218 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 GPR12P47775 334 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 GSDMDP57764 484 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 PDE1BQ01064 536 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 FAPQ12884 760 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 SLC13A2Q13183 592 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 SLC29A2Q14542 456 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 ZNF234Q14588 700 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 LPIN1Q14693 890 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 KCNAB1Q14722 419 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 RBMY1FQ15415 496 aaKnown RBP-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 TAZQ16635 292 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 KRTAP6-2Q3LI66 62 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 NHSL2Q5HYW2 709 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 MANEALQ5VSG8 457 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 MARC1Q5VT66 337 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 CCDC144NLQ6NUI1 221 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 ANKS1BQ7Z6G8 1248 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 ADAMTSL2Q86TH1 951 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 TMC8Q8IU68 726 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 NAXDQ8IW45 347 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 NKAPQ8N5F7 415 aaKnown RBP-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 AQP11Q8NBQ7 271 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 RBM15BQ8NDT2 890 aaKnown RBP-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 ATP8B4Q8TF62 1192 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 NPRL2Q8WTW4 380 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 FAR1Q8WVX9 515 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 SRSF12Q8WXF0 261 aaKnown RBP-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 TMEM143Q96AN5 459 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 COL21A1Q96P44 957 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 AGAP4Q96P64 663 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 DEPDC7Q96QD5 511 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 GTPBP4Q9BZE4 634 aaKnown RBP-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 VEZTQ9HBM0 779 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 A1CFQ9NQ94 594 aaKnown RBP-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 PIH1D1Q9NWS0 290 aaKnown RBP-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 SIRPGQ9P1W8 387 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 ERVK-11Q9UQG0 969 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 HPSEQ9Y251 543 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 SPEGQ15772 3267 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 MEGF6O75095 1541 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 TRIOO75962 3097 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 TNRQ92752 1358 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 COL5A3P25940 1745 aaPredicted RBP-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 LOC400499M0QZD8 3231 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 WDFY4Q6ZS81 3184 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 A0A087WZ62 844 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 TMEM269A0A1B0GVZ9 245 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 A8MWP4 228 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 PI4K2BG5E9Z4 385 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 M0QZQ0 153 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 FAM155BO75949 473 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 POP4O95707 220 aaKnown RBP-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 HLA-DQA2P01906 255 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 ODC1P11926 461 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 CORO1AP31146 461 aaKnown RBP-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 CLCNKAP51800 687 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 SEC61BP60468 96 aaKnown RBP-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 NKX6-1P78426 367 aaPredicted RBP-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 CAPSQ13938 189 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 NR1D2Q14995 579 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 ACAP2Q15057 778 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 TRADDQ15628 312 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 CTF1Q16619 201 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 Q5VSD8 79 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 TMEM88Q6PEY1 159 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 SLC30A9Q6PML9 568 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 REG3GQ6UW15 175 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 ISLR2Q6UXK2 745 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 Q6ZRP5 223 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 G2E3Q7L622 706 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 TRIM74Q86UV6 250 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 TRIM73Q86UV7 250 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 MEX3DQ86XN8 651 aaKnown RBP-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 CCDC71Q8IV32 467 aaPredicted RBP-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 CHERPQ8IWX8 916 aaKnown RBP-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 ZNF491Q8N8L2 437 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 MCPH1Q8NEM0 835 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 OR6B3Q8NGW1 331 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 FAM110DQ8TAY7 271 aaPredicted RBP-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 HDAC7Q8WUI4 952 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 LEO1Q8WVC0 666 aaPredicted RBP-0.8□□□□□ -2.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms