RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 PFDN4Q9NQP4 134 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 TMEM9Q9P0T7 183 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 ZNF639Q9UID6 485 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 CCDC162PA2VCL2 907 aa16.28■□□□□ 0.2
SDC4-201ENST00000372733 KCNH1O95259 989 aa16.28■□□□□ 0.2
SDC4-201ENST00000372733 ZNF12P17014 697 aa16.28■□□□□ 0.2
SDC4-201ENST00000372733 RENBPP51606 427 aa16.28■□□□□ 0.2
SDC4-201ENST00000372733 MLLT10P55197 1068 aa16.28■□□□□ 0.2
SDC4-201ENST00000372733 CACNB2Q08289 660 aaPredicted RBP16.28■□□□□ 0.2
SDC4-201ENST00000372733 MOGQ16653 247 aa16.28■□□□□ 0.2
SDC4-201ENST00000372733 GALNT18Q6P9A2 607 aa16.28■□□□□ 0.2
SDC4-201ENST00000372733 RALGPS2Q86X27 583 aaPredicted RBP16.28■□□□□ 0.2
SDC4-201ENST00000372733 RNF168Q8IYW5 571 aaPredicted RBP16.28■□□□□ 0.2
SDC4-201ENST00000372733 FBXO39Q8N4B4 442 aa16.28■□□□□ 0.2
SDC4-201ENST00000372733 OR13C4Q8NGS5 318 aa16.28■□□□□ 0.2
SDC4-201ENST00000372733 OR10T2Q8NGX3 314 aa16.28■□□□□ 0.2
SDC4-201ENST00000372733 SNX19Q92543 992 aa16.28■□□□□ 0.2
SDC4-201ENST00000372733 NMUR1Q9HB89 426 aa16.28■□□□□ 0.2
SDC4-201ENST00000372733 CCDC154A6NI56 674 aa16.28■□□□□ 0.2
SDC4-201ENST00000372733 NCF1BA6NI72 391 aaPredicted RBP16.28■□□□□ 0.2
SDC4-201ENST00000372733 NCF1CA8MVU1 366 aaPredicted RBP16.28■□□□□ 0.2
SDC4-201ENST00000372733 CD3EAPO15446 510 aaKnown RBP16.28■□□□□ 0.2
SDC4-201ENST00000372733 EEDO75530 441 aaKnown RBP16.28■□□□□ 0.2
SDC4-201ENST00000372733 NCF1P14598 390 aaPredicted RBP16.28■□□□□ 0.2
SDC4-201ENST00000372733 TCF3P15923 654 aa16.28■□□□□ 0.2
SDC4-201ENST00000372733 HTR7P34969 479 aa16.28■□□□□ 0.2
SDC4-201ENST00000372733 GRSF1Q12849 480 aaKnown RBP eCLIP16.28■□□□□ 0.2
SDC4-201ENST00000372733 NR1D2Q14995 579 aa16.28■□□□□ 0.2
SDC4-201ENST00000372733 SCD5Q86SK9 330 aa16.28■□□□□ 0.2
SDC4-201ENST00000372733 PSMG2Q969U7 264 aa16.28■□□□□ 0.2
SDC4-201ENST00000372733 ACOX2Q99424 681 aa16.28■□□□□ 0.2
SDC4-201ENST00000372733 NANOGQ9H9S0 305 aa16.28■□□□□ 0.2
SDC4-201ENST00000372733 SP110Q9HB58 689 aa16.28■□□□□ 0.2
SDC4-201ENST00000372733 INIPQ9NRY2 104 aa16.28■□□□□ 0.2
SDC4-201ENST00000372733 ANKRD12Q6UB98 2062 aa16.27■□□□□ 0.2
SDC4-201ENST00000372733 DICER1Q9UPY3 1922 aaKnown RBP16.27■□□□□ 0.2
SDC4-201ENST00000372733 RSL1D1O76021 490 aaKnown RBP16.27■□□□□ 0.2
SDC4-201ENST00000372733 CNTN5O94779 1100 aa16.27■□□□□ 0.2
SDC4-201ENST00000372733 GLP2RO95838 553 aa16.27■□□□□ 0.2
SDC4-201ENST00000372733 PCNAP12004 261 aa16.27■□□□□ 0.2
SDC4-201ENST00000372733 IL7RP16871 459 aa16.27■□□□□ 0.2
SDC4-201ENST00000372733 PSEN2P49810 448 aa16.27■□□□□ 0.2
SDC4-201ENST00000372733 AGTR2P50052 363 aa16.27■□□□□ 0.2
SDC4-201ENST00000372733 EEFSECP57772 596 aaKnown RBP16.27■□□□□ 0.2
SDC4-201ENST00000372733 GRAMD4Q6IC98 578 aa16.27■□□□□ 0.2
SDC4-201ENST00000372733 PGBD5Q8N414 524 aa16.27■□□□□ 0.2
SDC4-201ENST00000372733 DCBLD1Q8N8Z6 715 aa16.27■□□□□ 0.2
SDC4-201ENST00000372733 OR2T11Q8NH01 316 aa16.27■□□□□ 0.2
SDC4-201ENST00000372733 GLT1D1Q96MS3 346 aa16.27■□□□□ 0.2
SDC4-201ENST00000372733 TUBA1CQ9BQE3 449 aa16.27■□□□□ 0.2
SDC4-201ENST00000372733 ING2Q9H160 280 aa16.27■□□□□ 0.2
SDC4-201ENST00000372733 NTN4Q9HB63 628 aa16.27■□□□□ 0.2
SDC4-201ENST00000372733 ADARB2Q9NS39 739 aaKnown RBP16.27■□□□□ 0.2
SDC4-201ENST00000372733 ABCC13Q9NSE7 274 aa16.27■□□□□ 0.2
SDC4-201ENST00000372733 BLOC1S6Q9UL45 172 aa16.27■□□□□ 0.2
SDC4-201ENST00000372733 RNF112Q9ULX5 631 aa16.27■□□□□ 0.2
SDC4-201ENST00000372733 PCDHGA11Q9Y5H2 935 aa16.27■□□□□ 0.2
SDC4-201ENST00000372733 SYNCRIPO60506 623 aaKnown RBP16.27■□□□□ 0.19
SDC4-201ENST00000372733 ECI2O75521 394 aa16.27■□□□□ 0.19
SDC4-201ENST00000372733 PRR35P0CG20 571 aa16.27■□□□□ 0.19
SDC4-201ENST00000372733 UMPSP11172 480 aa16.27■□□□□ 0.19
SDC4-201ENST00000372733 MBL2P11226 248 aaPredicted RBP16.27■□□□□ 0.19
SDC4-201ENST00000372733 IL12AP29459 219 aa16.27■□□□□ 0.19
SDC4-201ENST00000372733 TSNQ15631 228 aaKnown RBP16.27■□□□□ 0.19
SDC4-201ENST00000372733 SPATS1Q496A3 300 aa16.27■□□□□ 0.19
SDC4-201ENST00000372733 ALFQ53S48 1182 aa16.27■□□□□ 0.19
SDC4-201ENST00000372733 HABP4Q5JVS0 413 aaKnown RBP16.27■□□□□ 0.19
SDC4-201ENST00000372733 IQSEC1Q6DN90 963 aa16.27■□□□□ 0.19
SDC4-201ENST00000372733 XAF1Q6GPH4 301 aa16.27■□□□□ 0.19
SDC4-201ENST00000372733 UGT3A1Q6NUS8 523 aa16.27■□□□□ 0.19
SDC4-201ENST00000372733 FAM171BQ6P995 826 aa16.27■□□□□ 0.19
SDC4-201ENST00000372733 SLC2A7Q6PXP3 512 aa16.27■□□□□ 0.19
SDC4-201ENST00000372733 SYVN1Q86TM6 617 aa16.27■□□□□ 0.19
SDC4-201ENST00000372733 TMEM199Q8N511 208 aa16.27■□□□□ 0.19
SDC4-201ENST00000372733 PDPRQ8NCN5 879 aa16.27■□□□□ 0.19
SDC4-201ENST00000372733 NPLOC4Q8TAT6 608 aa16.27■□□□□ 0.19
SDC4-201ENST00000372733 BPIFB1Q8TDL5 484 aa16.27■□□□□ 0.19
SDC4-201ENST00000372733 YTHDF1Q9BYJ9 559 aaKnown RBP16.27■□□□□ 0.19
SDC4-201ENST00000372733 LHPPQ9H008 270 aa16.27■□□□□ 0.19
SDC4-201ENST00000372733 LTB4R2Q9NPC1 389 aa16.27■□□□□ 0.19
SDC4-201ENST00000372733 FAM105AQ9NUU6 356 aa16.27■□□□□ 0.19
SDC4-201ENST00000372733 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.27■□□□□ 0.19
SDC4-201ENST00000372733 LEF1Q9UJU2 399 aaPredicted RBP16.27■□□□□ 0.19
SDC4-201ENST00000372733 FAM50BQ9Y247 325 aa16.27■□□□□ 0.19
SDC4-201ENST00000372733 UBA6A0AVT1 1052 aaPredicted RBP16.26■□□□□ 0.19
SDC4-201ENST00000372733 ARL5CA6NH57 179 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 SERPINB7O75635 380 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 SLC22A3O75751 556 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 SEC14L2O76054 403 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 BCL10O95999 233 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 BCAP31P51572 246 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 SUOXP51687 545 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 POLR2JP52435 117 aaKnown RBP16.26■□□□□ 0.19
SDC4-201ENST00000372733 ARSFP54793 590 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 BFSP2Q13515 415 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 GALNT3Q14435 633 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 LDLRAP1Q5SW96 308 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 GPR142Q7Z601 462 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 RHEBL1Q8TAI7 183 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 ARRDC2Q8TBH0 407 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms