RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 MAMLD1Q13495 774 aa13.69□□□□□ -0.22
VPS29-201ENST00000360579 SEMA5AQ13591 1074 aa13.69□□□□□ -0.22
VPS29-201ENST00000360579 RFLNAQ6ZTI6 216 aa13.69□□□□□ -0.22
VPS29-201ENST00000360579 PCMTD1Q96MG8 357 aaPredicted RBP13.69□□□□□ -0.22
VPS29-201ENST00000360579 OR6C1Q96RD1 312 aa13.69□□□□□ -0.22
VPS29-201ENST00000360579 PEBP4Q96S96 227 aa13.69□□□□□ -0.22
VPS29-201ENST00000360579 AGAP2Q99490 1192 aa13.69□□□□□ -0.22
VPS29-201ENST00000360579 RIOK2Q9BVS4 552 aaKnown RBP13.69□□□□□ -0.22
VPS29-201ENST00000360579 TBC1D10AQ9BXI6 508 aa13.69□□□□□ -0.22
VPS29-201ENST00000360579 ZNF768Q9H5H4 540 aaKnown RBP13.69□□□□□ -0.22
VPS29-201ENST00000360579 KCNK6Q9Y257 313 aa13.69□□□□□ -0.22
VPS29-201ENST00000360579 SIK3Q9Y2K2 1263 aa13.69□□□□□ -0.22
VPS29-201ENST00000360579 A0A0J9YYE9 177 aa13.68□□□□□ -0.22
VPS29-201ENST00000360579 FZD6O60353 706 aa13.68□□□□□ -0.22
VPS29-201ENST00000360579 MAFKO60675 156 aa13.68□□□□□ -0.22
VPS29-201ENST00000360579 UBXN7O94888 489 aa13.68□□□□□ -0.22
VPS29-201ENST00000360579 TRBC1P01850 177 aa13.68□□□□□ -0.22
VPS29-201ENST00000360579 ATP1A1P05023 1023 aaKnown RBP13.68□□□□□ -0.22
VPS29-201ENST00000360579 FGF5P12034 268 aa13.68□□□□□ -0.22
VPS29-201ENST00000360579 HOXB1P14653 301 aaPredicted RBP13.68□□□□□ -0.22
VPS29-201ENST00000360579 SERPINB6P35237 376 aa13.68□□□□□ -0.22
VPS29-201ENST00000360579 PGDP52209 483 aa13.68□□□□□ -0.22
VPS29-201ENST00000360579 GFERP55789 205 aa13.68□□□□□ -0.22
VPS29-201ENST00000360579 UBE2IP63279 158 aaKnown RBP13.68□□□□□ -0.22
VPS29-201ENST00000360579 DNASE1L3Q13609 305 aa13.68□□□□□ -0.22
VPS29-201ENST00000360579 PTPRRQ15256 657 aa13.68□□□□□ -0.22
VPS29-201ENST00000360579 KRT31Q15323 416 aa13.68□□□□□ -0.22
VPS29-201ENST00000360579 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.68□□□□□ -0.22
VPS29-201ENST00000360579 PLEKHA7Q6IQ23 1121 aa13.68□□□□□ -0.22
VPS29-201ENST00000360579 TP53INP2Q8IXH6 220 aa13.68□□□□□ -0.22
VPS29-201ENST00000360579 ARFGAP1Q8N6T3 406 aa13.68□□□□□ -0.22
VPS29-201ENST00000360579 THAP4Q8WY91 577 aa13.68□□□□□ -0.22
VPS29-201ENST00000360579 CARD9Q9H257 536 aa13.68□□□□□ -0.22
VPS29-201ENST00000360579 CLSTN2Q9H4D0 955 aa13.68□□□□□ -0.22
VPS29-201ENST00000360579 HAUS2Q9NVX0 235 aa13.68□□□□□ -0.22
VPS29-201ENST00000360579 LNPEPQ9UIQ6 1025 aa13.68□□□□□ -0.22
VPS29-201ENST00000360579 PRKAB1Q9Y478 270 aa13.68□□□□□ -0.22
VPS29-201ENST00000360579 TMEM191CA6NGB0 347 aa13.67□□□□□ -0.22
VPS29-201ENST00000360579 GRID2O43424 1007 aa13.67□□□□□ -0.22
VPS29-201ENST00000360579 RASSF9O75901 435 aa13.67□□□□□ -0.22
VPS29-201ENST00000360579 VIPP01282 170 aa13.67□□□□□ -0.22
VPS29-201ENST00000360579 PDGFAP04085 211 aa13.67□□□□□ -0.22
VPS29-201ENST00000360579 PDHA1P08559 390 aa13.67□□□□□ -0.22
VPS29-201ENST00000360579 FERP16591 822 aa13.67□□□□□ -0.22
VPS29-201ENST00000360579 AMD1P17707 334 aa13.67□□□□□ -0.22
VPS29-201ENST00000360579 XRCC1P18887 633 aaPredicted RBP13.67□□□□□ -0.22
VPS29-201ENST00000360579 CA4P22748 312 aa13.67□□□□□ -0.22
VPS29-201ENST00000360579 CES1P23141 567 aa13.67□□□□□ -0.22
VPS29-201ENST00000360579 VARSP26640 1264 aaKnown RBP13.67□□□□□ -0.22
VPS29-201ENST00000360579 CLCNKAP51800 687 aa13.67□□□□□ -0.22
VPS29-201ENST00000360579 TMEM26Q6ZUK4 368 aa13.67□□□□□ -0.22
VPS29-201ENST00000360579 CYP4V2Q6ZWL3 525 aaPredicted RBP13.67□□□□□ -0.22
VPS29-201ENST00000360579 TMEM135Q86UB9 458 aa13.67□□□□□ -0.22
VPS29-201ENST00000360579 PPP1R3BQ86XI6 285 aa13.67□□□□□ -0.22
VPS29-201ENST00000360579 LRRC49Q8IUZ0 686 aa13.67□□□□□ -0.22
VPS29-201ENST00000360579 TRIM48Q8IWZ4 208 aa13.67□□□□□ -0.22
VPS29-201ENST00000360579 AOPEPQ8N6M6 819 aa13.67□□□□□ -0.22
VPS29-201ENST00000360579 ENOX1Q8TC92 643 aaKnown RBP13.67□□□□□ -0.22
VPS29-201ENST00000360579 TGM7Q96PF1 710 aa13.67□□□□□ -0.22
VPS29-201ENST00000360579 GPR87Q9BY21 358 aa13.67□□□□□ -0.22
VPS29-201ENST00000360579 POLR1EQ9GZS1 481 aaKnown RBP13.67□□□□□ -0.22
VPS29-201ENST00000360579 LHX9Q9NQ69 397 aa13.67□□□□□ -0.22
VPS29-201ENST00000360579 MAP4K5Q9Y4K4 846 aa13.67□□□□□ -0.22
VPS29-201ENST00000360579 PCDHGA9Q9Y5G4 932 aaKnown RBP13.67□□□□□ -0.22
VPS29-201ENST00000360579 PCYT1BQ9Y5K3 369 aaPredicted RBP13.67□□□□□ -0.22
VPS29-201ENST00000360579 PRRC2CQ9Y520 2896 aaKnown RBP13.67□□□□□ -0.22
VPS29-201ENST00000360579 A0A0U1RQS6 177 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 RGSL1A5PLK6 1076 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 GPR89AB7ZAQ6 455 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 NUAK1O60285 661 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 SEMA7AO75326 666 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 LRCH4O75427 683 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 SPAG6O75602 509 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 GPR89BP0CG08 455 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 SEPHS1P49903 392 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 RPL26P61254 145 aaKnown RBP13.66□□□□□ -0.22
VPS29-201ENST00000360579 SH3BP2P78314 561 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 ITKQ08881 620 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 DPYSL2Q16555 572 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 CDKAL1Q5VV42 579 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 PRSS42Q7Z5A4 293 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 ANKRD20A12PQ8NF67 263 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 ZDHHC12Q96GR4 267 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 PLEKHG4BQ96PX9 1271 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 LYSMD1Q96S90 227 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 SLC25A23Q9BV35 468 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 SLC29A3Q9BZD2 475 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 BRD8Q9H0E9 1235 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 FAM83DQ9H4H8 585 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 ACTL8Q9H568 366 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 PDE7BQ9NP56 450 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 NT5MQ9NPB1 228 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 OGFRQ9NZT2 677 aa13.66□□□□□ -0.22
VPS29-201ENST00000360579 RCOR3Q9P2K3 495 aaPredicted RBP13.66□□□□□ -0.22
VPS29-201ENST00000360579 CNOT6Q9ULM6 557 aaKnown RBP13.66□□□□□ -0.22
VPS29-201ENST00000360579 RPL26L1Q9UNX3 145 aaKnown RBP13.66□□□□□ -0.22
VPS29-201ENST00000360579 DNAJB5O75953 348 aa13.65□□□□□ -0.22
VPS29-201ENST00000360579 MTA2O94776 668 aa13.65□□□□□ -0.22
VPS29-201ENST00000360579 SORBS2O94875 1100 aaKnown RBP13.65□□□□□ -0.22
VPS29-201ENST00000360579 TYRP1P17643 537 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms