RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 SEC31AO94979 1220 aaKnown RBP9.13□□□□□ -0.95
UPF2-202ENST00000357604 CLDN7O95471 211 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 ESRRBO95718 433 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 ANXA5P08758 320 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 ATP1A2P50993 1020 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 SEMA3BQ13214 749 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 IRF4Q15306 451 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 AFMIDQ63HM1 303 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 MACC1Q6ZN28 852 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 CHST15Q7LFX5 561 aaPredicted RBP9.13□□□□□ -0.95
UPF2-202ENST00000357604 TEX26Q8N6G2 289 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 ARMC2Q8NEN0 867 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 HDAC10Q969S8 669 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 RSPRY1Q96DX4 576 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 ZDHHC12Q96GR4 267 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 ARRDC1-AS1Q9H2J1 176 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 GPAMQ9HCL2 828 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 SLC24A2Q9UI40 661 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 FKBPLQ9UIM3 349 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 METTL12A8MUP2 240 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 GRID2O43424 1007 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 C8GP07360 202 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 RBMS1P29558 406 aaKnown RBP9.12□□□□□ -0.95
UPF2-202ENST00000357604 ELK3P41970 407 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 PXNP49023 591 aaPredicted RBP9.12□□□□□ -0.95
UPF2-202ENST00000357604 ARHGAP12Q8IWW6 846 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 CERS2Q96G23 380 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 C10orf88Q9H8K7 445 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 TRIM39Q9HCM9 518 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 IMP3Q9NV31 184 aaKnown RBP9.12□□□□□ -0.95
UPF2-202ENST00000357604 KCNK4Q9NYG8 393 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 CPSF2Q9P2I0 782 aaKnown RBP9.12□□□□□ -0.95
UPF2-202ENST00000357604 COQ6Q9Y2Z9 468 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 PAPLNO95428 1278 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 GOT2P00505 430 aaKnown RBP9.12□□□□□ -0.95
UPF2-202ENST00000357604 ADPRHP54922 357 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 TXNRD3NBQ6F5E7 133 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 ADAMTSL4Q6UY14 1074 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 ZDHHC1Q8WTX9 485 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 SLCO2A1Q92959 643 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 SRMSQ9H3Y6 488 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 TNPO3Q9Y5L0 923 aaKnown RBP9.12□□□□□ -0.95
UPF2-202ENST00000357604 KLHL41O60662 606 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 USP12O75317 370 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 GABRG2P18507 467 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 CSTF2P33240 577 aaKnown RBP eCLIP9.12□□□□□ -0.95
UPF2-202ENST00000357604 RGS1Q08116 209 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 KRT78Q8N1N4 520 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 NETO2Q8NC67 525 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 FBF1Q8TES7 1133 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 WBP2Q969T9 261 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 DTD2Q96FN9 168 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 FAR2Q96K12 515 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 EDEM2Q9BV94 578 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 MVB12BQ9H7P6 319 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 CASS4Q9NQ75 786 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 KLC4Q9NSK0 619 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 VPS18Q9P253 973 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 ASF1AQ9Y294 204 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 SUN1O94901 812 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 MT-CYBP00156 380 aaPredicted RBP9.12□□□□□ -0.95
UPF2-202ENST00000357604 PIRTP0C851 137 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 MYL2P10916 166 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 DRG2P55039 364 aaKnown RBP9.12□□□□□ -0.95
UPF2-202ENST00000357604 TRAF2Q12933 501 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 ANKRD20A4Q4UJ75 823 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 LRRC73Q5JTD7 316 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 FNBP1LQ5T0N5 605 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 PNCKQ6P2M8 343 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 KYAT3Q6YP21 454 aaKnown RBP9.12□□□□□ -0.95
UPF2-202ENST00000357604 SYTL1Q8IYJ3 562 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 GLYATL1Q969I3 302 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 DUSP15Q9H1R2 295 aaPredicted RBP9.12□□□□□ -0.95
UPF2-202ENST00000357604 AHSPQ9NZD4 102 aa9.12□□□□□ -0.95
UPF2-202ENST00000357604 FFAR2O15552 330 aa9.11□□□□□ -0.95
UPF2-202ENST00000357604 ETS1P14921 441 aa9.11□□□□□ -0.95
UPF2-202ENST00000357604 ITGAXP20702 1163 aa9.11□□□□□ -0.95
UPF2-202ENST00000357604 CCND1P24385 295 aa9.11□□□□□ -0.95
UPF2-202ENST00000357604 ETV3P41162 512 aa9.11□□□□□ -0.95
UPF2-202ENST00000357604 RAP1GDS1P52306 607 aa9.11□□□□□ -0.95
UPF2-202ENST00000357604 SP140Q13342 867 aa9.11□□□□□ -0.95
UPF2-202ENST00000357604 LAPTM5Q13571 262 aa9.11□□□□□ -0.95
UPF2-202ENST00000357604 SPIDRQ14159 915 aa9.11□□□□□ -0.95
UPF2-202ENST00000357604 BHLHA9Q7RTU4 235 aa9.11□□□□□ -0.95
UPF2-202ENST00000357604 HEATR4Q86WZ0 1026 aa9.11□□□□□ -0.95
UPF2-202ENST00000357604 LCN9Q8WX39 176 aa9.11□□□□□ -0.95
UPF2-202ENST00000357604 KHSRPQ92945 711 aaKnown RBP eCLIP9.11□□□□□ -0.952e-6■■□□□ 13.7
UPF2-202ENST00000357604 ART4Q93070 314 aa9.11□□□□□ -0.95
UPF2-202ENST00000357604 DEPDC7Q96QD5 511 aa9.11□□□□□ -0.95
UPF2-202ENST00000357604 GAREM1Q9H706 876 aa9.11□□□□□ -0.95
UPF2-202ENST00000357604 WSB2Q9NYS7 404 aaPredicted RBP9.11□□□□□ -0.95
UPF2-202ENST00000357604 ARL5AQ9Y689 179 aa9.11□□□□□ -0.95
UPF2-202ENST00000357604 FAM95CA0A1B0GW59 222 aa9.11□□□□□ -0.95
UPF2-202ENST00000357604 GLRA3O75311 464 aa9.11□□□□□ -0.95
UPF2-202ENST00000357604 KATNA1O75449 491 aa9.11□□□□□ -0.95
UPF2-202ENST00000357604 HMOX2P30519 316 aa9.11□□□□□ -0.95
UPF2-202ENST00000357604 GRK6P43250 576 aa9.11□□□□□ -0.95
UPF2-202ENST00000357604 STC1P52823 247 aa9.11□□□□□ -0.95
UPF2-202ENST00000357604 PRKAA2P54646 552 aa9.11□□□□□ -0.95
UPF2-202ENST00000357604 CCINQ13939 588 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms