RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 CHST15Q7LFX5 561 aaPredicted RBP9.14□□□□□ -0.95
USP4-202ENST00000351842 SDCCAG8Q86SQ7 713 aaPredicted RBP9.14□□□□□ -0.95
USP4-202ENST00000351842 TMEM135Q86UB9 458 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 FATE1Q969F0 183 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 TSACCQ96A04 125 aaPredicted RBP9.14□□□□□ -0.95
USP4-202ENST00000351842 DCUN1D1Q96GG9 259 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 SH3GL2Q99962 352 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 CHRDQ9H2X0 955 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 MTO1Q9Y2Z2 717 aaKnown RBP9.14□□□□□ -0.95
USP4-202ENST00000351842 UNC13CQ8NB66 2214 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 LRRC72A6NJI9 287 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 E7ESA3 106 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 CDK14O94921 469 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 NFKBIAP25963 317 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 NFATC2Q13469 925 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 C1orf61Q13536 156 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 IRF4Q15306 451 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 SPANXN3Q5MJ09 141 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 MRNIPQ6NTE8 343 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 LILRA3Q8N6C8 439 aaPredicted RBP9.14□□□□□ -0.95
USP4-202ENST00000351842 FOXJ1Q92949 421 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 CAVIN3Q969G5 261 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 EBF2Q9HAK2 575 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 ARNT2Q9HBZ2 717 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 FAM86C1Q9NVL1 165 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 ZNF358Q9NW07 568 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 HACD3Q9P035 362 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 CPSF2Q9P2I0 782 aaKnown RBP9.14□□□□□ -0.95
USP4-202ENST00000351842 NCF1BA6NI72 391 aaPredicted RBP9.14□□□□□ -0.95
USP4-202ENST00000351842 NCF1CA8MVU1 366 aaPredicted RBP9.14□□□□□ -0.95
USP4-202ENST00000351842 AREL1O15033 823 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 NCF1P14598 390 aaPredicted RBP9.14□□□□□ -0.95
USP4-202ENST00000351842 ITPKAP23677 461 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 TYK2P29597 1187 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 CSNK1DP48730 415 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 CSNK1EP49674 416 aaKnown RBP9.14□□□□□ -0.95
USP4-202ENST00000351842 THOP1P52888 689 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 IL9RQ01113 521 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 CREB5Q02930 508 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 CCDC157Q569K6 752 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 GPRC6AQ5T6X5 926 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 TEDDM1Q5T9Z0 273 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 LMNTD1Q8N9Z9 388 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 PIGKQ92643 395 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 TADA1Q96BN2 335 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 ALKBH8Q96BT7 664 aaKnown RBP9.14□□□□□ -0.95
USP4-202ENST00000351842 LRIG1Q96JA1 1093 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 SLC6A18Q96N87 628 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 COL25A1Q9BXS0 654 aaPredicted RBP9.14□□□□□ -0.95
USP4-202ENST00000351842 PRSS21Q9Y6M0 314 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 MROH6A6NGR9 719 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 AGPSO00116 658 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 NDC80O14777 642 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 RHOBTB1O94844 696 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 CFIP05156 583 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 NEFHP12036 1026 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 AOC1P19801 751 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 GABRB3P28472 473 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 STC1P52823 247 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 MAGOHP61326 146 aaKnown RBP9.13□□□□□ -0.95
USP4-202ENST00000351842 MSLNQ13421 630 aaPredicted RBP9.13□□□□□ -0.95
USP4-202ENST00000351842 PDPK2PQ6A1A2 396 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 ENPP7Q6UWV6 458 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 HID1Q8IV36 788 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 C1orf210Q8IVY1 113 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 OR2I1PQ8NGU4 316 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.13□□□□□ -0.95
USP4-202ENST00000351842 VPS39Q96JC1 886 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 CLPBQ9H078 707 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 ACSS3Q9H6R3 686 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 CYP4F12Q9HCS2 524 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 CD248Q9HCU0 757 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 TREX1Q9NSU2 369 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 NLE1Q9NVX2 485 aaPredicted RBP9.13□□□□□ -0.95
USP4-202ENST00000351842 GALPQ9UBC7 116 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 PLEKHM1Q9Y4G2 1056 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 GPSM3Q9Y4H4 160 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 URB1O60287 2271 aaKnown RBP9.13□□□□□ -0.95
USP4-202ENST00000351842 SPTBP11277 2137 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 MSH3P20585 1137 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 CD6P30203 668 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 ARCN1P48444 511 aaKnown RBP9.13□□□□□ -0.95
USP4-202ENST00000351842 RPS21P63220 83 aaKnown RBP9.13□□□□□ -0.95
USP4-202ENST00000351842 DBN1Q16643 649 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 ZSCAN26Q16670 478 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 USP39Q53GS9 565 aaKnown RBP9.13□□□□□ -0.95
USP4-202ENST00000351842 C16orf46Q6P387 395 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 PACS1Q6VY07 963 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 DPPA4Q7L190 304 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 HORMAD1Q86X24 394 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 KIAA1958Q8N8K9 716 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 MOCOSQ96EN8 888 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 MCCC1Q96RQ3 725 aaPredicted RBP9.13□□□□□ -0.95
USP4-202ENST00000351842 COPS8Q99627 209 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 NAT9Q9BTE0 207 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 FRMD8Q9BZ67 464 aaPredicted RBP9.13□□□□□ -0.95
USP4-202ENST00000351842 LATS2Q9NRM7 1088 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 KCNK6Q9Y257 313 aa9.13□□□□□ -0.95
USP4-202ENST00000351842 MAGEB16A2A368 324 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 TMEM202A6NGA9 273 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms