RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 ZNF221Q9UK13 617 aa8.65□□□□□ -1.02
RTN3-202ENST00000339997 MAP4K5Q9Y4K4 846 aa8.65□□□□□ -1.02
RTN3-202ENST00000339997 TRBV23OR9-2A0A075B6M9 112 aa8.65□□□□□ -1.02
RTN3-202ENST00000339997 BOLA2-SMG1P6H3BVE0 249 aa8.65□□□□□ -1.02
RTN3-202ENST00000339997 CCRL2O00421 344 aa8.65□□□□□ -1.02
RTN3-202ENST00000339997 AIREO43918 545 aa8.65□□□□□ -1.02
RTN3-202ENST00000339997 RSL1D1O76021 490 aaKnown RBP8.65□□□□□ -1.02
RTN3-202ENST00000339997 TGFB3P10600 412 aa8.65□□□□□ -1.02
RTN3-202ENST00000339997 IDO1P14902 403 aa8.65□□□□□ -1.02
RTN3-202ENST00000339997 VARSP26640 1264 aaKnown RBP8.65□□□□□ -1.02
RTN3-202ENST00000339997 MRPS5P82675 430 aaKnown RBP8.65□□□□□ -1.02
RTN3-202ENST00000339997 ASTE1Q2TB18 679 aaPredicted RBP8.65□□□□□ -1.02
RTN3-202ENST00000339997 NOMO2Q5JPE7 1267 aa8.65□□□□□ -1.02
RTN3-202ENST00000339997 NEK5Q6P3R8 708 aa8.65□□□□□ -1.02
RTN3-202ENST00000339997 BTN2A1Q7KYR7 527 aa8.65□□□□□ -1.02
RTN3-202ENST00000339997 PLEKHH3Q7Z736 793 aa8.65□□□□□ -1.02
RTN3-202ENST00000339997 CTU1Q7Z7A3 348 aaKnown RBP8.65□□□□□ -1.02
RTN3-202ENST00000339997 TCAIMQ8N3R3 496 aa8.65□□□□□ -1.02
RTN3-202ENST00000339997 SEC14L1Q92503 715 aa8.65□□□□□ -1.02
RTN3-202ENST00000339997 MYDGFQ969H8 173 aa8.65□□□□□ -1.02
RTN3-202ENST00000339997 FAM210AQ96ND0 272 aa8.65□□□□□ -1.02
RTN3-202ENST00000339997 KCTD15Q96SI1 283 aaPredicted RBP8.65□□□□□ -1.02
RTN3-202ENST00000339997 MCMBPQ9BTE3 642 aa8.65□□□□□ -1.02
RTN3-202ENST00000339997 CNPPD1Q9BV87 410 aa8.65□□□□□ -1.02
RTN3-202ENST00000339997 CHIAQ9BZP6 476 aa8.65□□□□□ -1.02
RTN3-202ENST00000339997 WRAP73Q9P2S5 460 aaPredicted RBP8.65□□□□□ -1.02
RTN3-202ENST00000339997 NOCTQ9UK39 431 aaKnown RBP8.65□□□□□ -1.02
RTN3-202ENST00000339997 ZNF490Q9ULM2 529 aaPredicted RBP8.65□□□□□ -1.02
RTN3-202ENST00000339997 VPS4AQ9UN37 437 aa8.65□□□□□ -1.02
RTN3-202ENST00000339997 SSR3Q9UNL2 185 aa8.65□□□□□ -1.02
RTN3-202ENST00000339997 TBC1D30Q9Y2I9 924 aa8.65□□□□□ -1.02
RTN3-202ENST00000339997 FAM92AA1XBS5 289 aa8.65□□□□□ -1.03
RTN3-202ENST00000339997 CHURC1-FNTBB4DL54 471 aa8.65□□□□□ -1.03
RTN3-202ENST00000339997 CLDN25C9JDP6 229 aa8.65□□□□□ -1.03
RTN3-202ENST00000339997 IRF6O14896 467 aa8.65□□□□□ -1.03
RTN3-202ENST00000339997 PQBP1O60828 265 aaKnown RBP8.65□□□□□ -1.03
RTN3-202ENST00000339997 PAGE1O75459 146 aa8.65□□□□□ -1.03
RTN3-202ENST00000339997 H6PDO95479 791 aa8.65□□□□□ -1.03
RTN3-202ENST00000339997 DGKAP23743 735 aa8.65□□□□□ -1.03
RTN3-202ENST00000339997 GJA8P48165 433 aa8.65□□□□□ -1.03
RTN3-202ENST00000339997 POLR2JP52435 117 aaKnown RBP8.65□□□□□ -1.03
RTN3-202ENST00000339997 JAM2P57087 298 aa8.65□□□□□ -1.03
RTN3-202ENST00000339997 PPP2R2BQ00005 443 aa8.65□□□□□ -1.03
RTN3-202ENST00000339997 CREB5Q02930 508 aa8.65□□□□□ -1.03
RTN3-202ENST00000339997 TMEM132BQ14DG7 1078 aa8.65□□□□□ -1.03
RTN3-202ENST00000339997 UBAP2Q5T6F2 1119 aaKnown RBP8.65□□□□□ -1.03
RTN3-202ENST00000339997 P2RY8Q86VZ1 359 aa8.65□□□□□ -1.03
RTN3-202ENST00000339997 NKAPQ8N5F7 415 aaKnown RBP8.65□□□□□ -1.03
RTN3-202ENST00000339997 RTL3Q8N8U3 475 aaKnown RBP8.65□□□□□ -1.03
RTN3-202ENST00000339997 PMM1Q92871 262 aa8.65□□□□□ -1.03
RTN3-202ENST00000339997 NKD2Q969F2 451 aaPredicted RBP8.65□□□□□ -1.03
RTN3-202ENST00000339997 PRR11Q96HE9 360 aaPredicted RBP8.65□□□□□ -1.03
RTN3-202ENST00000339997 MFSD14AQ96MC6 490 aa8.65□□□□□ -1.03
RTN3-202ENST00000339997 PKP2Q99959 881 aa8.65□□□□□ -1.03
RTN3-202ENST00000339997 FTHL17Q9BXU8 183 aa8.65□□□□□ -1.03
RTN3-202ENST00000339997 ELL3Q9HB65 397 aaPredicted RBP8.65□□□□□ -1.03
RTN3-202ENST00000339997 SNTG1Q9NSN8 517 aa8.65□□□□□ -1.03
RTN3-202ENST00000339997 CRNNQ9UBG3 495 aaPredicted RBP8.65□□□□□ -1.03
RTN3-202ENST00000339997 PPIEQ9UNP9 301 aaKnown RBP8.65□□□□□ -1.03
RTN3-202ENST00000339997 A0A075B6Q4 140 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 CYP3A7-CYP3A51PA0A087WV96 503 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 SMAD9O15198 467 aaKnown RBP8.64□□□□□ -1.03
RTN3-202ENST00000339997 RGS10O43665 173 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 MYCLP1P12525 358 aaPredicted RBP8.64□□□□□ -1.03
RTN3-202ENST00000339997 CYP3A7P24462 503 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 RPL4P36578 427 aaKnown RBP8.64□□□□□ -1.03
RTN3-202ENST00000339997 PIGFQ07326 219 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 ACVR2BQ13705 512 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 C1orf127Q8N9H9 656 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 PIWIL1Q96J94 861 aaKnown RBP8.64□□□□□ -1.03
RTN3-202ENST00000339997 ZFP3Q96NJ6 502 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 AARSD1Q9BTE6 412 aaKnown RBP8.64□□□□□ -1.03
RTN3-202ENST00000339997 GSDMCQ9BYG8 508 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 AGO3Q9H9G7 860 aaKnown RBP8.64□□□□□ -1.03
RTN3-202ENST00000339997 TBC1D17Q9HA65 648 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 HMGXB4Q9UGU5 601 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 PCDHGC3Q9UN70 934 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 RWDD3Q9Y3V2 267 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 UBIAD1Q9Y5Z9 338 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 NHSL1Q5SYE7 1610 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 CNTNAP4Q9C0A0 1308 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 H3BSH0 61 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 ENO2P09104 434 aaPredicted RBP8.64□□□□□ -1.03
RTN3-202ENST00000339997 AP2S1P53680 142 aaPredicted RBP8.64□□□□□ -1.03
RTN3-202ENST00000339997 SMARCB1Q12824 385 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 BNIP2Q12982 314 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 BMT2Q1RMZ1 405 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 SETMARQ53H47 684 aaPredicted RBP8.64□□□□□ -1.03
RTN3-202ENST00000339997 HYIQ5T013 277 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 TAPT1Q6NXT6 567 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 RASSF6Q6ZTQ3 369 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 UBR7Q8N806 425 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 ATL1Q8WXF7 558 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 TCF25Q9BQ70 676 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 NLNQ9BYT8 704 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 FBXO44Q9H4M3 255 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 MAT2BQ9NZL9 334 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 COMMD3Q9UBI1 195 aa8.64□□□□□ -1.03
RTN3-202ENST00000339997 RPL26L1Q9UNX3 145 aaKnown RBP8.64□□□□□ -1.03
RTN3-202ENST00000339997 SLC35F4A4IF30 521 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms