RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 ADIPOR2Q86V24 386 aa15.21■□□□□ 0.03
SF3B4-201ENST00000271628 AGR3Q8TD06 166 aa15.21■□□□□ 0.03
SF3B4-201ENST00000271628 NRG4Q8WWG1 115 aa15.21■□□□□ 0.03
SF3B4-201ENST00000271628 KIAA1191Q96A73 305 aa15.21■□□□□ 0.03
SF3B4-201ENST00000271628 PTERQ96BW5 349 aa15.21■□□□□ 0.03
SF3B4-201ENST00000271628 FAM136AQ96C01 138 aa15.21■□□□□ 0.03
SF3B4-201ENST00000271628 MOCOSQ96EN8 888 aa15.21■□□□□ 0.03
SF3B4-201ENST00000271628 FAR2Q96K12 515 aa15.21■□□□□ 0.03
SF3B4-201ENST00000271628 ASB2Q96Q27 587 aa15.21■□□□□ 0.03
SF3B4-201ENST00000271628 GPR21Q99679 349 aa15.21■□□□□ 0.03
SF3B4-201ENST00000271628 TCF7L2Q9NQB0 619 aa15.21■□□□□ 0.03
SF3B4-201ENST00000271628 TRMT6Q9UJA5 497 aaKnown RBP15.21■□□□□ 0.03
SF3B4-201ENST00000271628 SLC8A2Q9UPR5 921 aa15.21■□□□□ 0.03
SF3B4-201ENST00000271628 WNT6Q9Y6F9 365 aa15.21■□□□□ 0.03
SF3B4-201ENST00000271628 TRPC5OSA6NMA1 111 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 SYCE1LA8MT33 242 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 PRR5-ARHGAP8B1AHC4 643 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 PRMT5O14744 637 aaPredicted RBP15.2■□□□□ 0.02
SF3B4-201ENST00000271628 BNIP3LO60238 219 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 PRAMEF1O95521 474 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 ITGALP20701 1170 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 KCNA5P22460 613 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 RECQLP46063 649 aaPredicted RBP15.2■□□□□ 0.02
SF3B4-201ENST00000271628 KCNC1P48547 511 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 ACTR3P61158 418 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 ARHGAP8P85298 464 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 GPR33Q49SQ1 333 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 SLC9B1Q4ZJI4 515 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 SETMARQ53H47 684 aaPredicted RBP15.2■□□□□ 0.02
SF3B4-201ENST00000271628 DPY19L3Q6ZPD9 716 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 ULK2Q8IYT8 1036 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 ING5Q8WYH8 240 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 P2RY12Q9H244 342 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 ASB8Q9H765 288 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 CYP4F12Q9HCS2 524 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 SLCO3A1Q9UIG8 710 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 FBXO10Q9UK96 956 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 A0A0U1RQS6 177 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 WASH3PC4AMC7 463 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 MAP3K7O43318 606 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 OR1I1O60431 355 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 PAPLNO95428 1278 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 NCF2P19878 526 aaPredicted RBP15.2■□□□□ 0.02
SF3B4-201ENST00000271628 CHRM3P20309 590 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 SPAM1P38567 509 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 NFATC2Q13469 925 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 ZNF678Q5SXM1 525 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 FRMD7Q6ZUT3 714 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 KDM1BQ8NB78 822 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 GRIN3AQ8TCU5 1115 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 ASIC4Q96FT7 647 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 ATOH8Q96SQ7 321 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 THTPAQ9BU02 230 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 VCXQ9H320 206 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 ZDHHC6Q9H6R6 413 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 ERVW-1Q9UQF0 538 aa15.2■□□□□ 0.02
SF3B4-201ENST00000271628 GLYATL1P3A0A0U1RQE8 302 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 GRID2O43424 1007 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 KERAO60938 352 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 SP100P23497 879 aaPredicted RBP15.19■□□□□ 0.02
SF3B4-201ENST00000271628 CCR10P46092 362 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 VASPP50552 380 aaPredicted RBP15.19■□□□□ 0.02
SF3B4-201ENST00000271628 IL2P60568 153 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 NAA20P61599 178 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 AP2B1P63010 937 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 HERVK_113P63132 956 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 MXRA7P84157 204 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 UBAP2LQ14157 1087 aaKnown RBP15.19■□□□□ 0.02
SF3B4-201ENST00000271628 DHCR24Q15392 516 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 CTSL3PQ5NE16 218 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 SH2D4BQ5SQS7 431 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 C9orf50Q5SZB4 431 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 ZDHHC20Q5W0Z9 365 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 FAM109BQ6ICB4 259 aaPredicted RBP15.19■□□□□ 0.02
SF3B4-201ENST00000271628 FAM151BQ6UXP7 276 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 ZSWIM9Q86XI8 627 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 RBFAQ8N0V3 343 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 FBXO27Q8NI29 283 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 ITFG1Q8TB96 612 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 MAPK15Q8TD08 544 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 DTX3LQ8TDB6 740 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 OSCP1Q8WVF1 389 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 VOPP1Q96AW1 172 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 CMTM5Q96DZ9 223 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 CCDC28BQ9BUN5 200 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 ERVK-6Q9BXR3 956 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 CLPBQ9H078 707 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 LMAN2LQ9H0V9 348 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 IL26Q9NPH9 171 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 ACSS2Q9NR19 701 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 DUS2Q9NX74 493 aaKnown RBP15.19■□□□□ 0.02
SF3B4-201ENST00000271628 RNF112Q9ULX5 631 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 CDYLQ9Y232 598 aa15.19■□□□□ 0.02
SF3B4-201ENST00000271628 NUP210Q8TEM1 1887 aaPredicted RBP15.18■□□□□ 0.02
SF3B4-201ENST00000271628 H3BMM5 538 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 FKBP6O75344 327 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 SUPT7LO94864 414 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 HNRNPLP14866 589 aaKnown RBP eCLIP15.18■□□□□ 0.02
SF3B4-201ENST00000271628 RPS3P23396 243 aaKnown RBP eCLIP15.18■□□□□ 0.025e-7■■■■■ 28.7
SF3B4-201ENST00000271628 NFKBIAP25963 317 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms