RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 TAF10Q12962 218 aa18.6■□□□□ 0.57
CPSF3-201ENST00000238112 DCTN2Q13561 401 aaKnown RBP18.6■□□□□ 0.57
CPSF3-201ENST00000238112 RBBP7Q16576 425 aa18.6■□□□□ 0.57
CPSF3-201ENST00000238112 RABL3Q5HYI8 236 aa18.6■□□□□ 0.57
CPSF3-201ENST00000238112 GLT6D1Q7Z4J2 308 aa18.6■□□□□ 0.57
CPSF3-201ENST00000238112 KLHDC9Q8NEP7 349 aa18.6■□□□□ 0.57
CPSF3-201ENST00000238112 CYGBQ8WWM9 190 aa18.6■□□□□ 0.57
CPSF3-201ENST00000238112 RMDN1Q96DB5 314 aa18.6■□□□□ 0.57
CPSF3-201ENST00000238112 MYEOVQ96EZ4 313 aa18.6■□□□□ 0.57
CPSF3-201ENST00000238112 GPR21Q99679 349 aa18.6■□□□□ 0.57
CPSF3-201ENST00000238112 PDFQ9HBH1 243 aa18.6■□□□□ 0.57
CPSF3-201ENST00000238112 PFDN4Q9NQP4 134 aa18.6■□□□□ 0.57
CPSF3-201ENST00000238112 IL37Q9NZH6 218 aa18.6■□□□□ 0.57
CPSF3-201ENST00000238112 IKZF3Q9UKT9 509 aa18.6■□□□□ 0.57
CPSF3-201ENST00000238112 NOD1Q9Y239 953 aa18.6■□□□□ 0.57
CPSF3-201ENST00000238112 TYW5A2RUC4 315 aaKnown RBP18.59■□□□□ 0.57
CPSF3-201ENST00000238112 INPPL1O15357 1258 aa18.59■□□□□ 0.57
CPSF3-201ENST00000238112 SNX2O60749 519 aa18.59■□□□□ 0.57
CPSF3-201ENST00000238112 SEC24DO94855 1032 aaPredicted RBP18.59■□□□□ 0.57
CPSF3-201ENST00000238112 RASAL1O95294 804 aa18.59■□□□□ 0.57
CPSF3-201ENST00000238112 MLYCDO95822 493 aa18.59■□□□□ 0.57
CPSF3-201ENST00000238112 PYGLP06737 847 aa18.59■□□□□ 0.57
CPSF3-201ENST00000238112 UROSP10746 265 aa18.59■□□□□ 0.57
CPSF3-201ENST00000238112 TACR2P21452 398 aa18.59■□□□□ 0.57
CPSF3-201ENST00000238112 CASP2P42575 452 aa18.59■□□□□ 0.57
CPSF3-201ENST00000238112 APLP1P51693 650 aa18.59■□□□□ 0.57
CPSF3-201ENST00000238112 ZNF140P52738 457 aaPredicted RBP18.59■□□□□ 0.57
CPSF3-201ENST00000238112 LIPEQ05469 1076 aa18.59■□□□□ 0.57
CPSF3-201ENST00000238112 GRIK2Q13002 908 aa18.59■□□□□ 0.57
CPSF3-201ENST00000238112 FUT11Q495W5 492 aa18.59■□□□□ 0.57
CPSF3-201ENST00000238112 CTXN3Q4LDR2 81 aa18.59■□□□□ 0.57
CPSF3-201ENST00000238112 VARS2Q5ST30 1063 aaKnown RBP18.59■□□□□ 0.57
CPSF3-201ENST00000238112 NKAPQ8N5F7 415 aaKnown RBP18.59■□□□□ 0.57
CPSF3-201ENST00000238112 OR4K2Q8NGD2 314 aa18.59■□□□□ 0.57
CPSF3-201ENST00000238112 GAB3Q8WWW8 586 aa18.59■□□□□ 0.57
CPSF3-201ENST00000238112 FUBP1Q96AE4 644 aaKnown RBP18.59■□□□□ 0.57
CPSF3-201ENST00000238112 TRIB3Q96RU7 358 aa18.59■□□□□ 0.57
CPSF3-201ENST00000238112 LEF1Q9UJU2 399 aaPredicted RBP18.59■□□□□ 0.57
CPSF3-201ENST00000238112 MED16Q9Y2X0 877 aa18.59■□□□□ 0.57
CPSF3-201ENST00000238112 PLXNA3P51805 1871 aa18.59■□□□□ 0.57
CPSF3-201ENST00000238112 TANC1Q9C0D5 1861 aa18.59■□□□□ 0.57
CPSF3-201ENST00000238112 FAM92AA1XBS5 289 aa18.58■□□□□ 0.57
CPSF3-201ENST00000238112 F5H5T6 163 aa18.58■□□□□ 0.57
CPSF3-201ENST00000238112 STX16O14662 325 aa18.58■□□□□ 0.57
CPSF3-201ENST00000238112 EEDO75530 441 aaKnown RBP18.58■□□□□ 0.57
CPSF3-201ENST00000238112 SLC22A3O75751 556 aa18.58■□□□□ 0.57
CPSF3-201ENST00000238112 ESRRBO95718 433 aa18.58■□□□□ 0.57
CPSF3-201ENST00000238112 IGLV3-27P01718 113 aa18.58■□□□□ 0.57
CPSF3-201ENST00000238112 PRR35P0CG20 571 aa18.58■□□□□ 0.57
CPSF3-201ENST00000238112 C7P10643 843 aa18.58■□□□□ 0.57
CPSF3-201ENST00000238112 CYBAP13498 195 aa18.58■□□□□ 0.57
CPSF3-201ENST00000238112 SLC36A3Q495N2 470 aa18.58■□□□□ 0.57
CPSF3-201ENST00000238112 AASDHQ4L235 1098 aaPredicted RBP18.58■□□□□ 0.57
CPSF3-201ENST00000238112 SETMARQ53H47 684 aaPredicted RBP18.58■□□□□ 0.57
CPSF3-201ENST00000238112 NADSYN1Q6IA69 706 aa18.58■□□□□ 0.57
CPSF3-201ENST00000238112 TXNDC11Q6PKC3 985 aa18.58■□□□□ 0.57
CPSF3-201ENST00000238112 SYVN1Q86TM6 617 aa18.58■□□□□ 0.57
CPSF3-201ENST00000238112 SEPT8Q92599 483 aa18.58■□□□□ 0.57
CPSF3-201ENST00000238112 TEX37Q96LM6 180 aa18.58■□□□□ 0.57
CPSF3-201ENST00000238112 HGH1Q9BTY7 390 aa18.58■□□□□ 0.57
CPSF3-201ENST00000238112 LIN28AQ9H9Z2 209 aaKnown RBP18.58■□□□□ 0.57
CPSF3-201ENST00000238112 ZFYVE28Q9HCC9 887 aa18.58■□□□□ 0.57
CPSF3-201ENST00000238112 SUN2Q9UH99 717 aa18.58■□□□□ 0.57
CPSF3-201ENST00000238112 SPO11Q9Y5K1 396 aa18.58■□□□□ 0.57
CPSF3-201ENST00000238112 OAS3Q9Y6K5 1087 aaKnown RBP18.58■□□□□ 0.57
CPSF3-201ENST00000238112 CENPFP49454 3210 aa18.58■□□□□ 0.57
CPSF3-201ENST00000238112 A0A0D9SEW6 157 aa18.58■□□□□ 0.56
CPSF3-201ENST00000238112 KANSL1LA0AUZ9 987 aa18.58■□□□□ 0.56
CPSF3-201ENST00000238112 ASGR1P07306 291 aa18.58■□□□□ 0.56
CPSF3-201ENST00000238112 ARPP19P56211 112 aa18.58■□□□□ 0.56
CPSF3-201ENST00000238112 DSC1Q08554 894 aa18.58■□□□□ 0.56
CPSF3-201ENST00000238112 PTPRNQ16849 979 aa18.58■□□□□ 0.56
CPSF3-201ENST00000238112 ALG1LQ6GMV1 187 aa18.58■□□□□ 0.56
CPSF3-201ENST00000238112 SPRED1Q7Z699 444 aa18.58■□□□□ 0.56
CPSF3-201ENST00000238112 PTRH1Q86Y79 214 aaKnown RBP18.58■□□□□ 0.56
CPSF3-201ENST00000238112 LGI2Q8N0V4 545 aa18.58■□□□□ 0.56
CPSF3-201ENST00000238112 CFAP52Q8N1V2 620 aa18.58■□□□□ 0.56
CPSF3-201ENST00000238112 MGME1Q9BQP7 344 aa18.58■□□□□ 0.56
CPSF3-201ENST00000238112 CINPQ9BW66 212 aaPredicted RBP18.58■□□□□ 0.56
CPSF3-201ENST00000238112 SEPT3Q9UH03 358 aa18.58■□□□□ 0.56
CPSF3-201ENST00000238112 ANAPC2Q9UJX6 822 aa18.58■□□□□ 0.56
CPSF3-201ENST00000238112 MOXD2PA6NHM9 499 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 TMEM189-UBE2V1I3L0A0 370 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 VPS26AO75436 327 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 NCK1P16333 377 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 PRDX3P30048 256 aaKnown RBP18.57■□□□□ 0.56
CPSF3-201ENST00000238112 SOX11P35716 441 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 RANBP1P43487 201 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 MRPL19P49406 292 aaKnown RBP18.57■□□□□ 0.56
CPSF3-201ENST00000238112 AGTR2P50052 363 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 POLR2JP52435 117 aaKnown RBP18.57■□□□□ 0.56
CPSF3-201ENST00000238112 UFM1P61960 85 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 RING1Q06587 406 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 PAGE3Q5JUK9 113 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 SCIMPQ6UWF3 145 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 CLVS1Q8IUQ0 354 aaPredicted RBP18.57■□□□□ 0.56
CPSF3-201ENST00000238112 BIRC8Q96P09 236 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 PREBQ9HCU5 417 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 CD320Q9NPF0 282 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 PCTPQ9UKL6 214 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms