RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.78□□□□□ -0.68
UPF3A-212ENST00000619079 EIF3LQ9Y262 564 aaKnown RBP10.78□□□□□ -0.68
UPF3A-212ENST00000619079 PCDHA9Q9Y5H5 950 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 FAM95CA0A1B0GW59 222 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 H0Y858 1186 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 TAF4O00268 1085 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 SEPT4O43236 478 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 MTSS1O43312 755 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 MATN4O95460 622 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 KRT6AP02538 564 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 KRT6BP04259 564 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 PRKCBP05771 671 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 PFKMP08237 780 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 CDH1P12830 882 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 CASP3P42574 277 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 RGS7P49802 495 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 GSK3BP49841 420 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 SLC12A2P55011 1212 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 GP2P55259 537 aaKnown RBP10.77□□□□□ -0.68
UPF3A-212ENST00000619079 EEFSECP57772 596 aaKnown RBP10.77□□□□□ -0.68
UPF3A-212ENST00000619079 COPZ1P61923 177 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 TNFAIP2Q03169 654 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 LY6KQ17RY6 165 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 BTBD8Q5XKL5 378 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 TMC5Q6UXY8 1006 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 PDZD4Q76G19 769 aaPredicted RBP10.77□□□□□ -0.68
UPF3A-212ENST00000619079 CNTN4Q8IWV2 1026 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 LGI2Q8N0V4 545 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 C1orf127Q8N9H9 656 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 CHDHQ8NE62 594 aaPredicted RBP10.77□□□□□ -0.68
UPF3A-212ENST00000619079 TRPV1Q8NER1 839 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 BPIFB1Q8TDL5 484 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 C19orf60Q96EN9 201 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 FEM1AQ9BSK4 669 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 CHID1Q9BWS9 393 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 NT5C1AQ9BXI3 368 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 CEP41Q9BYV8 373 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 RNF38Q9H0F5 515 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 TRIT1Q9H3H1 467 aaKnown RBP10.77□□□□□ -0.68
UPF3A-212ENST00000619079 PRDM12Q9H4Q4 367 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 TLR9Q9NR96 1032 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 TBC1D14Q9P2M4 693 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 STAP1Q9ULZ2 295 aa10.77□□□□□ -0.68
UPF3A-212ENST00000619079 MYO18AQ92614 2054 aaKnown RBP10.77□□□□□ -0.69
UPF3A-212ENST00000619079 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.77□□□□□ -0.69
UPF3A-212ENST00000619079 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.77□□□□□ -0.69
UPF3A-212ENST00000619079 XYLBO75191 536 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 USP12O75317 370 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 DAB1O75553 588 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 RGS20O76081 388 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 PRSS23O95084 383 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 DLGAP3O95886 979 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 PGK1P00558 417 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 F7P08709 466 aaPredicted RBP10.77□□□□□ -0.69
UPF3A-212ENST00000619079 HTR1AP08908 422 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 CCL5P13501 91 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 IL7RP16871 459 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 CYP3A5P20815 502 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 CXCR2P25025 360 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 YWHAQP27348 245 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 NDST1P52848 882 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 ZIK1Q3SY52 487 aaPredicted RBP10.77□□□□□ -0.69
UPF3A-212ENST00000619079 GJC2Q5T442 439 aaPredicted RBP10.77□□□□□ -0.69
UPF3A-212ENST00000619079 CERCAMQ5T4B2 595 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 RSBN1Q5VWQ0 802 aaPredicted RBP10.77□□□□□ -0.69
UPF3A-212ENST00000619079 TAPT1Q6NXT6 567 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 RNF19BQ6ZMZ0 732 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 STRADAQ7RTN6 431 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 P2RY8Q86VZ1 359 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 LYSMD2Q8IV50 215 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 DCP1BQ8IZD4 617 aaKnown RBP10.77□□□□□ -0.69
UPF3A-212ENST00000619079 ASCC1Q8N9N2 400 aaKnown RBP10.77□□□□□ -0.69
UPF3A-212ENST00000619079 PSMA8Q8TAA3 256 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 DYNC2LI1Q8TCX1 351 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 RORBQ92753 470 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 IL12RB2Q99665 862 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 CLSTN3Q9BQT9 956 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 KATNBL1Q9H079 304 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.77□□□□□ -0.69
UPF3A-212ENST00000619079 C2orf40Q9H1Z8 148 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 DSN1Q9H410 356 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 EPS8L2Q9H6S3 715 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 RPF1Q9H9Y2 349 aaKnown RBP10.77□□□□□ -0.69
UPF3A-212ENST00000619079 POLE4Q9NR33 117 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 SETD4Q9NVD3 440 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.77□□□□□ -0.69
UPF3A-212ENST00000619079 QPCTLQ9NXS2 382 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 TMA7Q9Y2S6 64 aaKnown RBP10.77□□□□□ -0.69
UPF3A-212ENST00000619079 MFHAS1Q9Y4C4 1052 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 DOCK5Q9H7D0 1870 aa10.77□□□□□ -0.69
UPF3A-212ENST00000619079 LCTP09848 1927 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 TTC34A8MYJ7 566 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 RAD51BO15315 384 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 ALX3O95076 343 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 AHSGP02765 367 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 ITGB3P05106 788 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 RBP1P09455 135 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 CCDC159P0C7I6 412 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 MTHFD1P11586 935 aaKnown RBP10.76□□□□□ -0.69
UPF3A-212ENST00000619079 CAPN3P20807 821 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms