RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 CTNNBL1Q8WYA6 563 aaPredicted RBP17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 NCSTNQ92542 709 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 ZNF830Q96NB3 372 aaPredicted RBP17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 CEP41Q9BYV8 373 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 FAM83DQ9H4H8 585 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 KLHL3Q9UH77 587 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 HEY1Q9Y5J3 304 aa17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 PCYT1BQ9Y5K3 369 aaPredicted RBP17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 FLNBO75369 2602 aaKnown RBP17.45■□□□□ 0.38
SHKBP1-223ENST00000600552 SETXQ7Z333 2677 aaKnown RBP17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 STMND1H3BQB6 276 aa17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 GYPCP04921 128 aa17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 PYGLP06737 847 aa17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 PIRTP0C851 137 aa17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 TNNT1P13805 278 aa17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 MX2P20592 715 aa17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 SLC10A2Q12908 348 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 GALNT3Q14435 633 aa17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 NR1D2Q14995 579 aa17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 QPCTQ16769 361 aa17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 B4GALNT4Q76KP1 1039 aa17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 OR10G6Q8NH81 332 aa17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 CCHCR1Q8TD31 782 aa17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 RAPGEF5Q92565 580 aa17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 RNF31Q96EP0 1072 aa17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 SCARF2Q96GP6 870 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 TSGA13Q96PP4 275 aa17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 CTRCQ99895 268 aa17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 ZNF670Q9BS34 389 aa17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 MLPHQ9BV36 600 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 DEF6Q9H4E7 631 aa17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 PKD2L2Q9NZM6 624 aa17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 B3GALT1Q9Y5Z6 326 aa17.44■□□□□ 0.38
SHKBP1-223ENST00000600552 LRRD1A4D1F6 860 aa17.43■□□□□ 0.38
SHKBP1-223ENST00000600552 KRT7P08729 469 aa17.43■□□□□ 0.38
SHKBP1-223ENST00000600552 H2AFZP0C0S5 128 aa17.43■□□□□ 0.38
SHKBP1-223ENST00000600552 CD82P27701 267 aa17.43■□□□□ 0.38
SHKBP1-223ENST00000600552 SPINT3P49223 89 aa17.43■□□□□ 0.38
SHKBP1-223ENST00000600552 AP1B1Q10567 949 aa17.43■□□□□ 0.38
SHKBP1-223ENST00000600552 CLPPQ16740 277 aaPredicted RBP17.43■□□□□ 0.38
SHKBP1-223ENST00000600552 TMEM71Q6P5X7 295 aa17.43■□□□□ 0.38
SHKBP1-223ENST00000600552 H2AFVQ71UI9 128 aa17.43■□□□□ 0.38
SHKBP1-223ENST00000600552 LYSMD3Q7Z3D4 306 aa17.43■□□□□ 0.38
SHKBP1-223ENST00000600552 DTX1Q86Y01 620 aa17.43■□□□□ 0.38
SHKBP1-223ENST00000600552 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.43■□□□□ 0.38
SHKBP1-223ENST00000600552 COX14Q96I36 57 aa17.43■□□□□ 0.38
SHKBP1-223ENST00000600552 TBC1D29Q9UFV1 150 aa17.43■□□□□ 0.38
SHKBP1-223ENST00000600552 DNPEPQ9ULA0 475 aa17.43■□□□□ 0.38
SHKBP1-223ENST00000600552 CNOT6Q9ULM6 557 aaKnown RBP17.43■□□□□ 0.38
SHKBP1-223ENST00000600552 FADS2P1A8MWK0 482 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 DUX1O43812 170 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 DNAJC6O75061 913 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 THRAP10827 490 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 KDELR1P24390 212 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 HHEXQ03014 270 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 KCNC4Q03721 635 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 TRA2AQ13595 282 aaKnown RBP eCLIP17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 LRP8Q14114 963 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 PCSK7Q16549 785 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 PLA2G4EQ3MJ16 856 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 ANKS6Q68DC2 871 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 NLRP8Q86W28 1048 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 SFRP1Q8N474 314 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 HTR3CQ8WXA8 447 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 NKD1Q969G9 470 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 AGAP3Q96P47 875 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 WDR24Q96S15 920 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 SPATA16Q9BXB7 569 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 MAK16Q9BXY0 300 aaKnown RBP17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 BRD8Q9H0E9 1235 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 OR2AG1Q9H205 316 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 OSGEPL1Q9H4B0 414 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 STN1Q9H668 368 aaKnown RBP17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 DTLQ9NZJ0 730 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 UVRAGQ9P2Y5 699 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 SHOC2Q9UQ13 582 aa17.42■□□□□ 0.38
SHKBP1-223ENST00000600552 TENM4Q6N022 2769 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 ANKRD66B4E2M5 251 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 ITGB2P05107 769 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 MMP2P08253 660 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 LIFP15018 202 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 UGT1A3P35503 534 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 ARSDP51689 593 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 RPL26P61254 145 aaKnown RBP17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 DYNLT1P63172 113 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 GPLD1P80108 840 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 ZBTB17Q13105 803 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 ODF2Q5BJF6 829 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 DCAF12Q5T6F0 453 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 ALG1LQ6GMV1 187 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 CRTC3Q6UUV7 619 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 NPNTQ6UXI9 565 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 RFX6Q8HWS3 928 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 CACNA2D3Q8IZS8 1091 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 IQCDQ96DY2 449 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 RNF157Q96PX1 679 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 DPYSL5Q9BPU6 564 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 TBC1D10AQ9BXI6 508 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 ADGRE3Q9BY15 652 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 XPO4Q9C0E2 1151 aaKnown RBP17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms