RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 SMU1Q2TAY7 513 aa20.38■□□□□ 0.85
UPF1-207ENST00000599848 PCDHGC3Q9UN70 934 aa20.38■□□□□ 0.85
UPF1-207ENST00000599848 ARL5CA6NH57 179 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 NOL4O94818 638 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 TRBC1P01850 177 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 HSDL1Q3SXM5 330 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 DUSP9Q99956 384 aaKnown RBP20.37■□□□□ 0.85
UPF1-207ENST00000599848 BTBD10Q9BSF8 475 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 NR2F6P10588 404 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 NAGLUP54802 743 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 SLC1A5Q15758 541 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 SLC26A9Q7LBE3 791 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 FNIP1Q8TF40 1166 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 BTBD1Q9H0C5 482 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 SLC25A51Q9H1U9 297 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 SEMA4AQ9H3S1 761 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 MAN2B1O00754 1011 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 MAXP61244 160 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 UXS1Q8NBZ7 420 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 DNASE1L2Q92874 299 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 HAVCR1Q96D42 359 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 SNX27Q96L92 541 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 PDZD7Q9H5P4 517 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 ANKHQ9HCJ1 492 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 SAMD4AQ9UPU9 718 aaKnown RBP20.37■□□□□ 0.85
UPF1-207ENST00000599848 CHKBQ9Y259 395 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 SEC24CP53992 1094 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 PLGLB1Q02325 96 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 OR6Y1Q8NGX8 325 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 DQX1Q8TE96 717 aaKnown RBP20.37■□□□□ 0.85
UPF1-207ENST00000599848 B3GAT2Q9NPZ5 323 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 PIH1D1Q9NWS0 290 aaKnown RBP20.37■□□□□ 0.85
UPF1-207ENST00000599848 ASTN1O14525 1302 aa20.37■□□□□ 0.85
UPF1-207ENST00000599848 hCG_1818297A0A087WSY0 165 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 ANKRD65E5RJM6 399 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 CILPO75339 1184 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 GNPDA1P46926 289 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 ADGRG6Q86SQ4 1221 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 RANBP3LQ86VV4 465 aaPredicted RBP20.36■□□□□ 0.85
UPF1-207ENST00000599848 RASGRP3Q8IV61 690 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 ARL14EPQ8N8R7 260 aaPredicted RBP20.36■□□□□ 0.85
UPF1-207ENST00000599848 OR5B17Q8NGF7 314 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 DPYSL5Q9BPU6 564 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 ACAT2Q9BWD1 397 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 PLK2Q9NYY3 685 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 BTBD3Q9Y2F9 522 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 NOX1Q9Y5S8 564 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 BCL9LQ86UU0 1499 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 A0A087WXM4 84 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 INSIG1O15503 277 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 FAUP35544 74 aaKnown RBP20.36■□□□□ 0.85
UPF1-207ENST00000599848 RAB2AP61019 212 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 SMCO1Q147U7 214 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 HEPACAMQ14CZ8 416 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 EIPR1Q53HC9 387 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 FAM91A1Q658Y4 838 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 IL31RAQ8NI17 732 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 HAS1Q92839 578 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 NECTIN4Q96NY8 510 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 MYRFQ9Y2G1 1151 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 CLEC3AO75596 197 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 SLC44A4Q53GD3 710 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 GPR152Q8TDT2 470 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 WDR26Q9H7D7 661 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 PCDH18Q9HCL0 1135 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 TLR9Q9NR96 1032 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 IKZF3Q9UKT9 509 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 COG5Q9UP83 839 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 SLC31A1O15431 190 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 IDH2P48735 452 aaKnown RBP20.36■□□□□ 0.85
UPF1-207ENST00000599848 MYBPC3Q14896 1274 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 EFHD2Q96C19 240 aaPredicted RBP20.36■□□□□ 0.85
UPF1-207ENST00000599848 OR52E6Q96RD3 313 aa20.36■□□□□ 0.85
UPF1-207ENST00000599848 MAFBQ9Y5Q3 323 aaPredicted RBP20.36■□□□□ 0.85
UPF1-207ENST00000599848 EDDM13A0A1B0GTR0 161 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 HDAC3O15379 428 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 TNFAIP8O95379 198 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 PLA2G4EQ3MJ16 856 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 GCNT7Q6ZNI0 430 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 HMGB4Q8WW32 186 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 TRIM63Q969Q1 353 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 ST6GALNAC4Q9H4F1 302 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 SPAG4Q9NPE6 437 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 IL1RAPQ9NPH3 570 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 MKL2Q9ULH7 1088 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 SPATA2Q9UM82 520 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 KCNU1A8MYU2 1149 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 TPSB2P20231 275 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 TBX2Q13207 712 aaPredicted RBP20.35■□□□□ 0.85
UPF1-207ENST00000599848 GRB14Q14449 540 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 TPSAB1Q15661 275 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 CARD16Q5EG05 197 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 HECTD2Q5U5R9 776 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 CFAP52Q8N1V2 620 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 CCDC54Q8NEL0 328 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 GTPBP2Q9BX10 602 aaKnown RBP20.35■□□□□ 0.85
UPF1-207ENST00000599848 UNC93B1Q9H1C4 597 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 SNX7Q9UNH6 387 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 RBMXL2O75526 392 aaKnown RBP20.35■□□□□ 0.85
UPF1-207ENST00000599848 BCAP31P51572 246 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms