RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 FGF1P05230 155 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 CCDC175P0C221 793 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 PNLIPP16233 465 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 RBMS1P29558 406 aaKnown RBP14.04□□□□□ -0.16
LIG1-218ENST00000599322 ACTR1BP42025 376 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 POLD2P49005 469 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 CLDN6P56747 220 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 DCDC1P59894 354 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 ACTR1AP61163 376 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 CAMK2BQ13554 666 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 GTF2H3Q13889 308 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 IHHQ14623 411 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 RTP5Q14D33 572 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 HENMT1Q5T8I9 393 aaKnown RBP14.04□□□□□ -0.16
LIG1-218ENST00000599322 CDCP2Q5VXM1 449 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 OGFOD3Q6PK18 319 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 SLC30A9Q6PML9 568 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 ARHGEF18Q6ZSZ5 1173 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 RFLNAQ6ZTI6 216 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 PHYKPLQ8IUZ5 450 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 PELI3Q8N2H9 469 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 SLC25A41Q8N5S1 370 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 TRAM1L1Q8N609 369 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 GPR156Q8NFN8 814 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 GDAP1Q8TB36 358 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 ANP32BQ92688 251 aaKnown RBP14.04□□□□□ -0.16
LIG1-218ENST00000599322 CCDC74AQ96AQ1 378 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 TADA1Q96BN2 335 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 AKAP7Q9P0M2 348 aaPredicted RBP14.04□□□□□ -0.16
LIG1-218ENST00000599322 TAAR2Q9P1P5 351 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 LRIT1Q9P2V4 623 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 U3KQA8 63 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 URB1O60287 2271 aaKnown RBP14.04□□□□□ -0.16
LIG1-218ENST00000599322 LOC285095A0A1B0GVY8 99 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 C2orf81A6NN90 581 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 GPR89AB7ZAQ6 455 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 F5H423 210 aaPredicted RBP14.03□□□□□ -0.16
LIG1-218ENST00000599322 NUDT21O43809 227 aaKnown RBP14.03□□□□□ -0.16
LIG1-218ENST00000599322 PPFIA2O75334 1257 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 GPR89BP0CG08 455 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 CD68P34810 354 aaPredicted RBP14.03□□□□□ -0.16
LIG1-218ENST00000599322 PDE1BQ01064 536 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 CTBSQ01459 385 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 ISXQ2M1V0 245 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 COL28A1Q2UY09 1125 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 SIRPB2Q5JXA9 342 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 ANKRD20A2Q5SQ80 823 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 PERM1Q5SV97 790 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 CERCAMQ5T4B2 595 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 ANKRD20A1Q5TYW2 823 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 ANKRD20A3Q5VUR7 823 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 GLT6D1Q7Z4J2 308 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 TRIM74Q86UV6 250 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 CCNJLQ8IV13 435 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 Q8N9G6 341 aaPredicted RBP14.03□□□□□ -0.16
LIG1-218ENST00000599322 BLOC1S5Q8TDH9 187 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 COX14Q96I36 57 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 TMEM74Q96NL1 305 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 PLEKHG4BQ96PX9 1271 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 AGAP2Q99490 1192 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 ZMYND15Q9H091 742 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 GBA3Q9H227 469 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 CARD9Q9H257 536 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 TRIM39Q9HCM9 518 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 NFKBIL1Q9UBC1 381 aaPredicted RBP14.03□□□□□ -0.16
LIG1-218ENST00000599322 TRIM10Q9UDY6 481 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 RAXQ9Y2V3 346 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 ADGRG1Q9Y653 693 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 KNTC1P50748 2209 aa14.03□□□□□ -0.16
LIG1-218ENST00000599322 STX7O15400 261 aaKnown RBP14.02□□□□□ -0.17
LIG1-218ENST00000599322 PSMD3O43242 534 aa14.02□□□□□ -0.17
LIG1-218ENST00000599322 GRID2O43424 1007 aa14.02□□□□□ -0.17
LIG1-218ENST00000599322 SOD1P00441 154 aa14.02□□□□□ -0.17
LIG1-218ENST00000599322 ATP1A1P05023 1023 aaKnown RBP14.02□□□□□ -0.17
LIG1-218ENST00000599322 RPLP0P05388 317 aaKnown RBP14.02□□□□□ -0.17
LIG1-218ENST00000599322 VCLP18206 1134 aa14.02□□□□□ -0.17
LIG1-218ENST00000599322 HMGCLP35914 325 aa14.02□□□□□ -0.17
LIG1-218ENST00000599322 RPS6KA1Q15418 735 aa14.02□□□□□ -0.17
LIG1-218ENST00000599322 SLC1A5Q15758 541 aa14.02□□□□□ -0.17
LIG1-218ENST00000599322 PYCR3Q53H96 274 aa14.02□□□□□ -0.17
LIG1-218ENST00000599322 KDELC1Q6UW63 502 aa14.02□□□□□ -0.17
LIG1-218ENST00000599322 CHST15Q7LFX5 561 aaPredicted RBP14.02□□□□□ -0.17
LIG1-218ENST00000599322 PDZD3Q86UT5 571 aa14.02□□□□□ -0.17
LIG1-218ENST00000599322 AVL9Q8NBF6 648 aa14.02□□□□□ -0.17
LIG1-218ENST00000599322 CCL4L1Q8NHW4 92 aa14.02□□□□□ -0.17
LIG1-218ENST00000599322 BRSK1Q8TDC3 778 aa14.02□□□□□ -0.17
LIG1-218ENST00000599322 ALG3Q92685 438 aa14.02□□□□□ -0.17
LIG1-218ENST00000599322 GLYATL1Q969I3 302 aa14.02□□□□□ -0.17
LIG1-218ENST00000599322 SCARF2Q96GP6 870 aaPredicted RBP14.02□□□□□ -0.17
LIG1-218ENST00000599322 SPATA13Q96N96 652 aa14.02□□□□□ -0.17
LIG1-218ENST00000599322 FICDQ9BVA6 458 aa14.02□□□□□ -0.17
LIG1-218ENST00000599322 FRMD8P1Q9BZ68 369 aaPredicted RBP14.02□□□□□ -0.17
LIG1-218ENST00000599322 ZCCHC2Q9C0B9 1178 aaKnown RBP14.02□□□□□ -0.17
LIG1-218ENST00000599322 LRRN3Q9H3W5 708 aa14.02□□□□□ -0.17
LIG1-218ENST00000599322 POLR1BQ9H9Y6 1135 aa14.02□□□□□ -0.17
LIG1-218ENST00000599322 SPATS2LQ9NUQ6 558 aaKnown RBP14.02□□□□□ -0.17
LIG1-218ENST00000599322 FEZ2Q9UHY8 353 aaPredicted RBP14.02□□□□□ -0.17
LIG1-218ENST00000599322 APPL1Q9UKG1 709 aa14.02□□□□□ -0.17
LIG1-218ENST00000599322 PACSIN2Q9UNF0 486 aaPredicted RBP14.02□□□□□ -0.17
LIG1-218ENST00000599322 IGSF10Q6WRI0 2623 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms