RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 IQCDQ96DY2 449 aa23.73■■□□□ 1.39
LSM4-202ENST00000593564 AHCYL2Q96HN2 611 aaKnown RBP23.73■■□□□ 1.39
LSM4-202ENST00000593564 WDR24Q96S15 920 aa23.73■■□□□ 1.39
LSM4-202ENST00000593564 SLC12A9Q9BXP2 914 aa23.73■■□□□ 1.39
LSM4-202ENST00000593564 PCDH9Q9HC56 1237 aa23.73■■□□□ 1.39
LSM4-202ENST00000593564 SLC39A1Q9NY26 324 aa23.73■■□□□ 1.39
LSM4-202ENST00000593564 CNOT6Q9ULM6 557 aaKnown RBP23.73■■□□□ 1.39
LSM4-202ENST00000593564 CAPN11Q9UMQ6 739 aa23.73■■□□□ 1.39
LSM4-202ENST00000593564 PCYT1BQ9Y5K3 369 aaPredicted RBP23.73■■□□□ 1.39
LSM4-202ENST00000593564 TRBV23OR9-2A0A075B6M9 112 aa23.72■■□□□ 1.39
LSM4-202ENST00000593564 DUX1O43812 170 aa23.72■■□□□ 1.39
LSM4-202ENST00000593564 HLA-DQB2P05538 268 aa23.72■■□□□ 1.39
LSM4-202ENST00000593564 MX2P20592 715 aa23.72■■□□□ 1.39
LSM4-202ENST00000593564 GJC1P36383 396 aa23.72■■□□□ 1.39
LSM4-202ENST00000593564 RAB15P59190 212 aa23.72■■□□□ 1.39
LSM4-202ENST00000593564 HENMT1Q5T8I9 393 aaKnown RBP23.72■■□□□ 1.39
LSM4-202ENST00000593564 ZNF761Q86XN6 746 aaPredicted RBP23.72■■□□□ 1.39
LSM4-202ENST00000593564 MAP7D3Q8IWC1 876 aa23.72■■□□□ 1.39
LSM4-202ENST00000593564 IL22RA1Q8N6P7 574 aa23.72■■□□□ 1.39
LSM4-202ENST00000593564 FAF2Q96CS3 445 aa23.72■■□□□ 1.39
LSM4-202ENST00000593564 ZMYND15Q9H091 742 aa23.72■■□□□ 1.39
LSM4-202ENST00000593564 SARS2Q9NP81 518 aaKnown RBP23.72■■□□□ 1.39
LSM4-202ENST00000593564 OCIAD1Q9NX40 245 aa23.72■■□□□ 1.39
LSM4-202ENST00000593564 ZNHIT2Q9UHR6 403 aa23.72■■□□□ 1.39
LSM4-202ENST00000593564 OAS3Q9Y6K5 1087 aaKnown RBP23.72■■□□□ 1.39
LSM4-202ENST00000593564 C1orf232A0A0U1RR37 186 aa23.71■■□□□ 1.39
LSM4-202ENST00000593564 PROSCO94903 275 aa23.71■■□□□ 1.39
LSM4-202ENST00000593564 ATP1A1P05023 1023 aaKnown RBP23.71■■□□□ 1.39
LSM4-202ENST00000593564 SPINT3P49223 89 aa23.71■■□□□ 1.39
LSM4-202ENST00000593564 HHEXQ03014 270 aa23.71■■□□□ 1.39
LSM4-202ENST00000593564 GBE1Q04446 702 aa23.71■■□□□ 1.39
LSM4-202ENST00000593564 DCAF12Q5T6F0 453 aa23.71■■□□□ 1.39
LSM4-202ENST00000593564 WDR74Q6RFH5 385 aaPredicted RBP23.71■■□□□ 1.39
LSM4-202ENST00000593564 FAM129CQ86XR2 697 aa23.71■■□□□ 1.39
LSM4-202ENST00000593564 CPNE8Q86YQ8 564 aa23.71■■□□□ 1.39
LSM4-202ENST00000593564 BMPERQ8N8U9 685 aa23.71■■□□□ 1.39
LSM4-202ENST00000593564 CPLX3Q8WVH0 158 aa23.71■■□□□ 1.39
LSM4-202ENST00000593564 RMI1Q9H9A7 625 aa23.71■■□□□ 1.39
LSM4-202ENST00000593564 GEMIN8Q9NWZ8 242 aaKnown RBP23.71■■□□□ 1.39
LSM4-202ENST00000593564 TBC1D29Q9UFV1 150 aa23.71■■□□□ 1.39
LSM4-202ENST00000593564 NENFQ9UMX5 172 aa23.71■■□□□ 1.39
LSM4-202ENST00000593564 RGSL1A5PLK6 1076 aa23.7■■□□□ 1.38
LSM4-202ENST00000593564 EFCAB7A8K855 629 aa23.7■■□□□ 1.38
LSM4-202ENST00000593564 CSRP3P50461 194 aa23.7■■□□□ 1.38
LSM4-202ENST00000593564 UBASH3AP57075 661 aa23.7■■□□□ 1.38
LSM4-202ENST00000593564 TPM4P67936 248 aa23.7■■□□□ 1.38
LSM4-202ENST00000593564 CLCA4Q14CN2 919 aa23.7■■□□□ 1.38
LSM4-202ENST00000593564 IYDQ6PHW0 289 aa23.7■■□□□ 1.38
LSM4-202ENST00000593564 CHST15Q7LFX5 561 aaPredicted RBP23.7■■□□□ 1.38
LSM4-202ENST00000593564 CACNA2D3Q8IZS8 1091 aa23.7■■□□□ 1.38
LSM4-202ENST00000593564 PQLC3Q8N755 202 aa23.7■■□□□ 1.38
LSM4-202ENST00000593564 HDAC11Q96DB2 347 aa23.7■■□□□ 1.38
LSM4-202ENST00000593564 TEFMQ96QE5 360 aaKnown RBP23.7■■□□□ 1.38
LSM4-202ENST00000593564 HERPUD2Q9BSE4 406 aa23.7■■□□□ 1.38
LSM4-202ENST00000593564 FAM83DQ9H4H8 585 aa23.7■■□□□ 1.38
LSM4-202ENST00000593564 STN1Q9H668 368 aaKnown RBP23.7■■□□□ 1.38
LSM4-202ENST00000593564 PKD2L2Q9NZM6 624 aa23.7■■□□□ 1.38
LSM4-202ENST00000593564 UVRAGQ9P2Y5 699 aa23.7■■□□□ 1.38
LSM4-202ENST00000593564 LUC7L2Q9Y383 392 aaKnown RBP23.7■■□□□ 1.38
LSM4-202ENST00000593564 PRKAB1Q9Y478 270 aa23.7■■□□□ 1.38
LSM4-202ENST00000593564 ZFC3H1O60293 1989 aaKnown RBP23.7■■□□□ 1.38
LSM4-202ENST00000593564 A6NCN8 305 aa23.69■■□□□ 1.38
LSM4-202ENST00000593564 FADS2P1A8MWK0 482 aa23.69■■□□□ 1.38
LSM4-202ENST00000593564 TERTO14746 1132 aaKnown RBP23.69■■□□□ 1.38
LSM4-202ENST00000593564 SUV39H1O43463 412 aa23.69■■□□□ 1.38
LSM4-202ENST00000593564 RAD1O60671 282 aa23.69■■□□□ 1.38
LSM4-202ENST00000593564 PPFIA2O75334 1257 aa23.69■■□□□ 1.38
LSM4-202ENST00000593564 KRT7P08729 469 aa23.69■■□□□ 1.38
LSM4-202ENST00000593564 LIFP15018 202 aa23.69■■□□□ 1.38
LSM4-202ENST00000593564 PPM1FP49593 454 aaPredicted RBP23.69■■□□□ 1.38
LSM4-202ENST00000593564 TAS2R40P59535 323 aa23.69■■□□□ 1.38
LSM4-202ENST00000593564 QPCTQ16769 361 aa23.69■■□□□ 1.38
LSM4-202ENST00000593564 ATG14Q6ZNE5 492 aa23.69■■□□□ 1.38
LSM4-202ENST00000593564 ARHGAP22Q7Z5H3 698 aa23.69■■□□□ 1.38
LSM4-202ENST00000593564 CCDC13Q8IYE1 715 aa23.69■■□□□ 1.38
LSM4-202ENST00000593564 LRRN4Q8WUT4 740 aa23.69■■□□□ 1.38
LSM4-202ENST00000593564 SH3KBP1Q96B97 665 aa23.69■■□□□ 1.38
LSM4-202ENST00000593564 MLPHQ9BV36 600 aaPredicted RBP23.69■■□□□ 1.38
LSM4-202ENST00000593564 CBX8Q9HC52 389 aa23.69■■□□□ 1.38
LSM4-202ENST00000593564 CTTNBP2NLQ9P2B4 639 aa23.69■■□□□ 1.38
LSM4-202ENST00000593564 LCMT1Q9UIC8 334 aa23.69■■□□□ 1.38
LSM4-202ENST00000593564 ANKRD66B4E2M5 251 aa23.68■■□□□ 1.38
LSM4-202ENST00000593564 MMP2P08253 660 aa23.68■■□□□ 1.38
LSM4-202ENST00000593564 ACP5P13686 325 aa23.68■■□□□ 1.38
LSM4-202ENST00000593564 SLC2A4P14672 509 aa23.68■■□□□ 1.38
LSM4-202ENST00000593564 NFKB2Q00653 900 aa23.68■■□□□ 1.38
LSM4-202ENST00000593564 SLC10A2Q12908 348 aaPredicted RBP23.68■■□□□ 1.38
LSM4-202ENST00000593564 NFATC2Q13469 925 aa23.68■■□□□ 1.38
LSM4-202ENST00000593564 ANKS6Q68DC2 871 aa23.68■■□□□ 1.38
LSM4-202ENST00000593564 BORAQ6PGQ7 559 aa23.68■■□□□ 1.38
LSM4-202ENST00000593564 LYSMD3Q7Z3D4 306 aa23.68■■□□□ 1.38
LSM4-202ENST00000593564 SLC9B2Q86UD5 537 aa23.68■■□□□ 1.38
LSM4-202ENST00000593564 LUZP1Q86V48 1076 aa23.68■■□□□ 1.38
LSM4-202ENST00000593564 CCHCR1Q8TD31 782 aa23.68■■□□□ 1.38
LSM4-202ENST00000593564 SLC25A18Q9H1K4 315 aa23.68■■□□□ 1.38
LSM4-202ENST00000593564 ADNPQ9H2P0 1102 aa23.68■■□□□ 1.38
LSM4-202ENST00000593564 DTLQ9NZJ0 730 aa23.68■■□□□ 1.38
LSM4-202ENST00000593564 IL17BQ9UHF5 180 aa23.68■■□□□ 1.38
LSM4-202ENST00000593564 PILRAQ9UKJ1 303 aa23.68■■□□□ 1.38
LSM4-202ENST00000593564 KCNK6Q9Y257 313 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms