RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 HSFX1Q9UBD0 423 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 BCAP29Q9UHQ4 241 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 G3BP2Q9UN86 482 aaKnown RBP4.18□□□□□ -1.74
LIG3-211ENST00000588713 ZNF232Q9UNY5 417 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 TP53TG5Q9Y2B4 290 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 EFR3BQ9Y2G0 817 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 DTNAQ9Y4J8 743 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 NUB1Q9Y5A7 615 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 PCDHB11Q9Y5F2 797 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 PCDHGA8Q9Y5G5 932 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.18□□□□□ -1.74
LIG3-211ENST00000588713 MYH9P35579 1960 aaKnown RBP4.18□□□□□ -1.74
LIG3-211ENST00000588713 ANK1P16157 1881 aa4.18□□□□□ -1.74
LIG3-211ENST00000588713 ATRQ13535 2644 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 IGLV3-22A0A075B6J6 115 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 hCG_1818297A0A087WSY0 165 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 A0A088AWK7 358 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 IGKV6-21A0A0C4DH24 114 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 A0A1B0GVM2 712 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 A0A1W2PPM1 405 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 B2RBV5 119 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 E9PBE3 544 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 H0YJX3 145 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 TMEM189-UBE2V1I3L0A0 370 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 AGRPO00253 132 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 COPEO14579 308 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 SYN3O14994 580 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 DHX15O43143 795 aaKnown RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 B4GALT5O43286 388 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 SIGLEC6O43699 453 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 SNNO75324 88 aaPredicted RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 E2F6O75461 281 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 STK10O94804 968 aaKnown RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 KLHL2O95198 593 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 ZBED1O96006 694 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 MT-ND3P03897 115 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 PROCP04070 461 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 HNRNPCP07910 306 aaKnown RBP eCLIP4.17□□□□□ -1.74
LIG3-211ENST00000588713 INHBAP08476 426 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 LIPCP11150 499 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 ALOX15P16050 662 aaPredicted RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 PORP16435 677 aaPredicted RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 ZNF23P17027 643 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 ARF4P18085 180 aaPredicted RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 VCLP18206 1134 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 BGNP21810 368 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 PROZP22891 400 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 DDX6P26196 483 aaKnown RBP eCLIP4.17□□□□□ -1.74
LIG3-211ENST00000588713 AXLP30530 894 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 SLC6A4P31645 630 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 TNFRSF4P43489 277 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 MAP2K3P46734 347 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 CPA2P48052 419 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 ARRB1P49407 418 aaPredicted RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 NCKAP1LP55160 1127 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 ADARP55265 1226 aaKnown RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 GPX6P59796 221 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 SNRPNP63162 240 aaKnown RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 PDE1BQ01064 536 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 OVGP1Q12889 678 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 CCNIQ14094 377 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 EFTUD2Q15029 972 aaKnown RBP eCLIP4.17□□□□□ -1.744e-6■■■■□ 25.8
LIG3-211ENST00000588713 TRIP10Q15642 601 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 UPP1Q16831 310 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 MGAT5BQ3V5L5 792 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 MMEL1Q495T6 779 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 NADK2Q4G0N4 442 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 PDCD4Q53EL6 469 aaKnown RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 CCDC92Q53HC0 331 aaPredicted RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 PRR16Q569H4 304 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 RABGAP1LQ5R372 815 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 C1orf220Q5T0J3 134 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 XP32Q5T750 250 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 TTC39BQ5VTQ0 682 aaPredicted RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 PLEKHA7Q6IQ23 1121 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 RWDD4Q6NW29 188 aaKnown RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 SLC27A1Q6PCB7 646 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 PGM2L1Q6PCE3 622 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 SPOCD1Q6ZMY3 1216 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 C3orf62Q6ZUJ4 267 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 POLNQ7Z5Q5 900 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 PRPF39Q86UA1 669 aaKnown RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 SLC47A2Q86VL8 602 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 PHF13Q86YI8 300 aaPredicted RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 TREML1Q86YW5 311 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 CRLF3Q8IUI8 442 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 ERI1Q8IV48 349 aaKnown RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 RCOR2Q8IZ40 523 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 PQLC1Q8N2U9 271 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 BBS5Q8N3I7 341 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 NAT16Q8N8M0 369 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 NIPA2Q8N8Q9 360 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 NAT8LQ8N9F0 302 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 TERB1Q8NA31 727 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 FBXL13Q8NEE6 735 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 WDR36Q8NI36 951 aaKnown RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 SLC35B2Q8TB61 432 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 MAPK15Q8TD08 544 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 SH3RF2Q8TEC5 729 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 PYROXD1Q8WU10 500 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms