RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 DNPEPQ9ULA0 475 aa20.33■□□□□ 0.85
SHMT1-209ENST00000582653 PRKAB1Q9Y478 270 aa20.33■□□□□ 0.85
SHMT1-209ENST00000582653 PCYT1BQ9Y5K3 369 aaPredicted RBP20.33■□□□□ 0.85
SHMT1-209ENST00000582653 OAS3Q9Y6K5 1087 aaKnown RBP20.33■□□□□ 0.85
SHMT1-209ENST00000582653 ARHGEF17Q96PE2 2063 aaPredicted RBP20.33■□□□□ 0.84
SHMT1-209ENST00000582653 TRBV23OR9-2A0A075B6M9 112 aa20.32■□□□□ 0.84
SHMT1-209ENST00000582653 PRAMEF33A0A0G2JMD5 474 aa20.32■□□□□ 0.84
SHMT1-209ENST00000582653 PRAMEF10O60809 474 aa20.32■□□□□ 0.84
SHMT1-209ENST00000582653 ACTR1BP42025 376 aa20.32■□□□□ 0.84
SHMT1-209ENST00000582653 SPINT3P49223 89 aa20.32■□□□□ 0.84
SHMT1-209ENST00000582653 MAPK10P53779 464 aa20.32■□□□□ 0.84
SHMT1-209ENST00000582653 ACTR1AP61163 376 aa20.32■□□□□ 0.84
SHMT1-209ENST00000582653 BIRC2Q13490 618 aa20.32■□□□□ 0.84
SHMT1-209ENST00000582653 C16orf72Q14CZ0 275 aa20.32■□□□□ 0.84
SHMT1-209ENST00000582653 PDK1Q15118 436 aa20.32■□□□□ 0.84
SHMT1-209ENST00000582653 LLGL1Q15334 1064 aa20.32■□□□□ 0.84
SHMT1-209ENST00000582653 MAP9Q49MG5 647 aa20.32■□□□□ 0.84
SHMT1-209ENST00000582653 TMEM164Q5U3C3 297 aa20.32■□□□□ 0.84
SHMT1-209ENST00000582653 LRRC38Q5VT99 294 aa20.32■□□□□ 0.84
SHMT1-209ENST00000582653 MFSD7Q6UXD7 560 aa20.32■□□□□ 0.84
SHMT1-209ENST00000582653 DTX1Q86Y01 620 aa20.32■□□□□ 0.84
SHMT1-209ENST00000582653 RHOT1Q8IXI2 618 aa20.32■□□□□ 0.84
SHMT1-209ENST00000582653 OLFM3Q96PB7 478 aa20.32■□□□□ 0.84
SHMT1-209ENST00000582653 BRD8Q9H0E9 1235 aa20.32■□□□□ 0.84
SHMT1-209ENST00000582653 WDR70Q9NW82 654 aa20.32■□□□□ 0.84
SHMT1-209ENST00000582653 SAE1Q9UBE0 346 aaPredicted RBP20.32■□□□□ 0.84
SHMT1-209ENST00000582653 CNOT6Q9ULM6 557 aaKnown RBP20.32■□□□□ 0.84
SHMT1-209ENST00000582653 IGHV5-10-1A0A0J9YXX1 117 aa20.31■□□□□ 0.84
SHMT1-209ENST00000582653 FADS2P1A8MWK0 482 aa20.31■□□□□ 0.84
SHMT1-209ENST00000582653 C9orf172C9J069 976 aa20.31■□□□□ 0.84
SHMT1-209ENST00000582653 HGSO14964 777 aaPredicted RBP20.31■□□□□ 0.84
SHMT1-209ENST00000582653 PIRTP0C851 137 aa20.31■□□□□ 0.84
SHMT1-209ENST00000582653 CD82P27701 267 aa20.31■□□□□ 0.84
SHMT1-209ENST00000582653 SLC1A1P43005 524 aa20.31■□□□□ 0.84
SHMT1-209ENST00000582653 LIMK2P53671 638 aa20.31■□□□□ 0.84
SHMT1-209ENST00000582653 TRA2AQ13595 282 aaKnown RBP eCLIP20.31■□□□□ 0.84
SHMT1-209ENST00000582653 TCEAL1Q15170 157 aa20.31■□□□□ 0.84
SHMT1-209ENST00000582653 ODF2Q5BJF6 829 aa20.31■□□□□ 0.84
SHMT1-209ENST00000582653 LYSMD3Q7Z3D4 306 aa20.31■□□□□ 0.84
SHMT1-209ENST00000582653 VSIG1Q86XK7 387 aa20.31■□□□□ 0.84
SHMT1-209ENST00000582653 EID2BQ96D98 161 aa20.31■□□□□ 0.84
SHMT1-209ENST00000582653 NUDT22Q9BRQ3 303 aa20.31■□□□□ 0.84
SHMT1-209ENST00000582653 ADGRE3Q9BY15 652 aa20.31■□□□□ 0.84
SHMT1-209ENST00000582653 GOLPH3Q9H4A6 298 aa20.31■□□□□ 0.84
SHMT1-209ENST00000582653 FAM83DQ9H4H8 585 aa20.31■□□□□ 0.84
SHMT1-209ENST00000582653 DDX56Q9NY93 547 aaKnown RBP20.31■□□□□ 0.84
SHMT1-209ENST00000582653 ZNHIT2Q9UHR6 403 aa20.31■□□□□ 0.84
SHMT1-209ENST00000582653 INTUQ9ULD6 942 aa20.31■□□□□ 0.84
SHMT1-209ENST00000582653 TFR2Q9UP52 801 aa20.31■□□□□ 0.84
SHMT1-209ENST00000582653 PCDHB11Q9Y5F2 797 aa20.31■□□□□ 0.84
SHMT1-209ENST00000582653 SCN8AQ9UQD0 1980 aa20.3■□□□□ 0.84
SHMT1-209ENST00000582653 B8ZZF3 427 aa20.3■□□□□ 0.84
SHMT1-209ENST00000582653 SPOPO43791 374 aa20.3■□□□□ 0.84
SHMT1-209ENST00000582653 ZFXP17010 805 aaPredicted RBP20.3■□□□□ 0.84
SHMT1-209ENST00000582653 NOP2P46087 812 aaKnown RBP20.3■□□□□ 0.84
SHMT1-209ENST00000582653 LRP8Q14114 963 aa20.3■□□□□ 0.84
SHMT1-209ENST00000582653 PCSK7Q16549 785 aa20.3■□□□□ 0.84
SHMT1-209ENST00000582653 HENMT1Q5T8I9 393 aaKnown RBP20.3■□□□□ 0.84
SHMT1-209ENST00000582653 XKR5Q6UX68 686 aa20.3■□□□□ 0.84
SHMT1-209ENST00000582653 NT5DC3Q86UY8 548 aa20.3■□□□□ 0.84
SHMT1-209ENST00000582653 ZFAND4Q86XD8 727 aa20.3■□□□□ 0.84
SHMT1-209ENST00000582653 GALNT13Q8IUC8 556 aa20.3■□□□□ 0.84
SHMT1-209ENST00000582653 TC2NQ8N9U0 490 aa20.3■□□□□ 0.84
SHMT1-209ENST00000582653 OR4D9Q8NGE8 314 aa20.3■□□□□ 0.84
SHMT1-209ENST00000582653 SPATA22Q8NHS9 363 aa20.3■□□□□ 0.84
SHMT1-209ENST00000582653 CCHCR1Q8TD31 782 aa20.3■□□□□ 0.84
SHMT1-209ENST00000582653 SGF29Q96ES7 293 aa20.3■□□□□ 0.84
SHMT1-209ENST00000582653 IMP4Q96G21 291 aaKnown RBP20.3■□□□□ 0.84
SHMT1-209ENST00000582653 TRIB3Q96RU7 358 aa20.3■□□□□ 0.84
SHMT1-209ENST00000582653 DPYSL5Q9BPU6 564 aa20.3■□□□□ 0.84
SHMT1-209ENST00000582653 PKD2L2Q9NZM6 624 aa20.3■□□□□ 0.84
SHMT1-209ENST00000582653 FOXJ2Q9P0K8 574 aa20.3■□□□□ 0.84
SHMT1-209ENST00000582653 SHOC2Q9UQ13 582 aa20.3■□□□□ 0.84
SHMT1-209ENST00000582653 CFAP46Q8IYW2 2715 aa20.3■□□□□ 0.84
SHMT1-209ENST00000582653 IGHV1OR21-1A0A087WYE8 117 aa20.29■□□□□ 0.84
SHMT1-209ENST00000582653 RGSL1A5PLK6 1076 aa20.29■□□□□ 0.84
SHMT1-209ENST00000582653 IQCJ-SCHIP1C9J366 451 aaPredicted RBP20.29■□□□□ 0.84
SHMT1-209ENST00000582653 PPP1R12AO14974 1030 aaPredicted RBP20.29■□□□□ 0.84
SHMT1-209ENST00000582653 DNAJC6O75061 913 aa20.29■□□□□ 0.84
SHMT1-209ENST00000582653 EML2O95834 649 aa20.29■□□□□ 0.84
SHMT1-209ENST00000582653 CCL4P13236 92 aa20.29■□□□□ 0.84
SHMT1-209ENST00000582653 CDKN2BP42772 138 aa20.29■□□□□ 0.84
SHMT1-209ENST00000582653 MAGEA1P43355 309 aa20.29■□□□□ 0.84
SHMT1-209ENST00000582653 FASLGP48023 281 aa20.29■□□□□ 0.84
SHMT1-209ENST00000582653 MANEAQ5SRI9 462 aa20.29■□□□□ 0.84
SHMT1-209ENST00000582653 NKAIN2Q5VXU1 208 aa20.29■□□□□ 0.84
SHMT1-209ENST00000582653 CHST15Q7LFX5 561 aaPredicted RBP20.29■□□□□ 0.84
SHMT1-209ENST00000582653 RCBTB1Q8NDN9 531 aa20.29■□□□□ 0.84
SHMT1-209ENST00000582653 TRIM5Q9C035 493 aa20.29■□□□□ 0.84
SHMT1-209ENST00000582653 SLC25A51Q9H1U9 297 aa20.29■□□□□ 0.84
SHMT1-209ENST00000582653 ARFGAP3Q9NP61 516 aa20.29■□□□□ 0.84
SHMT1-209ENST00000582653 ALG6Q9Y672 507 aa20.29■□□□□ 0.84
SHMT1-209ENST00000582653 HELZ2Q9BYK8 2649 aaKnown RBP20.29■□□□□ 0.84
SHMT1-209ENST00000582653 MT-CYBP00156 380 aaPredicted RBP20.28■□□□□ 0.84
SHMT1-209ENST00000582653 SLC4A1P02730 911 aa20.28■□□□□ 0.84
SHMT1-209ENST00000582653 FGF3P11487 239 aaPredicted RBP20.28■□□□□ 0.84
SHMT1-209ENST00000582653 GPLD1P80108 840 aa20.28■□□□□ 0.84
SHMT1-209ENST00000582653 ADCY2Q08462 1091 aa20.28■□□□□ 0.84
SHMT1-209ENST00000582653 SRSF6Q13247 344 aaKnown RBP20.28■□□□□ 0.84
SHMT1-209ENST00000582653 ZNF648Q5T619 568 aaPredicted RBP20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms