RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 TAS2R38P59533 333 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 TAS2R40P59535 323 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 MRPS34P82930 218 aaKnown RBP4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 RELQ04864 619 aaPredicted RBP4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 CDC16Q13042 620 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 CRYMQ14894 314 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 DECR1Q16698 335 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 PNLIPRP3Q17RR3 467 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 SOWAHCQ53LP3 525 aaPredicted RBP4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 IRAK1BP1Q5VVH5 260 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 TMEM154Q6P9G4 183 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 GPR180Q86V85 440 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 EXOC3L1Q86VI1 746 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 RNF168Q8IYW5 571 aaPredicted RBP4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 WDTC1Q8N5D0 677 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 RBMXL3Q8N7X1 1067 aaKnown RBP4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 POC1AQ8NBT0 407 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 OR8K5Q8NH50 307 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 SPATA20Q8TB22 786 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 SCFD2Q8WU76 684 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 SECTM1Q8WVN6 248 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 SORCS1Q8WY21 1168 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 TAAR8Q969N4 342 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 CDCA5Q96FF9 252 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 QRFPRQ96P65 431 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 PCYT2Q99447 389 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 KRTAP1-5Q9BYS1 174 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 PIGMQ9H3S5 423 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 ZNF556Q9HAH1 456 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 EBF2Q9HAK2 575 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 LRRC4Q9HBW1 653 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 POU2F3Q9UKI9 436 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 KLHL20Q9Y2M5 609 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 LAS1LQ9Y4W2 734 aaKnown RBP4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 CGNL1Q0VF96 1302 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 FRMD3A2A2Y4 597 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 ZBED4O75132 1171 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 DDNO94850 711 aaPredicted RBP4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 CAMTA2O94983 1202 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 MYOD1P15172 320 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 TMEM11P17152 192 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 MCM3P25205 808 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 IL15P40933 162 aaPredicted RBP4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 LRMPQ12912 555 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 SIM2Q14190 667 aaPredicted RBP4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 ZNF805Q5CZA5 627 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 C18orf63Q68DL7 685 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 TRNP1Q6NT89 227 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 BRAT1Q6PJG6 821 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 GFRALQ6UXV0 394 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 SDCCAG8Q86SQ7 713 aaPredicted RBP4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 TMEM219Q86XT9 240 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 NRROSQ86YC3 692 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 C1orf87Q8N0U7 546 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 ACVR1CQ8NER5 493 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 OR1J2Q8NGS2 313 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 CHCHD6Q9BRQ6 235 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 MAF1Q9H063 256 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 SIL1Q9H173 461 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 EVA1AQ9H8M9 152 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 TMEM30AQ9NV96 361 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 STK39Q9UEW8 545 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 FBXL2Q9UKC9 423 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 PADI3Q9ULW8 664 aa4.47□□□□□ -1.69
SMCHD1-204ENST00000581226 PTPRCP08575 1304 aa4.46□□□□□ -1.69
SMCHD1-204ENST00000581226 LILRA5A6NI73 299 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 AP3D1O14617 1153 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 KCNN4O15554 427 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 BUB3O43684 328 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 PTP4A3O75365 173 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 DAB1O75553 588 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 KCNK5O95279 499 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 ICAM1P05362 532 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 CDH1P12830 882 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 HLA-DOBP13765 273 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 USP8P40818 1118 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 UBA7P41226 1012 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 APOBEC1P41238 236 aaKnown RBP4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 ZNF132P52740 706 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 ACSM2AQ08AH3 577 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 PDE1CQ14123 709 aaPredicted RBP4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 CCDC96Q2M329 555 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 ZNF672Q499Z4 452 aaPredicted RBP4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 ACSM2BQ68CK6 577 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 WBP2NLQ6ICG8 309 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 NR2C2APQ86WQ0 139 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 KMT5CQ86Y97 462 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 TICAM1Q8IUC6 712 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 TEX11Q8IYF3 940 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 NAGSQ8N159 534 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 TTC39CQ8N584 583 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 OR5R1Q8NH85 324 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 LNX1Q8TBB1 728 aaPredicted RBP4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 HM13Q8TCT9 377 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 DNAAF4Q8WXU2 420 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 CD101Q93033 1021 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 PIGTQ969N2 578 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 ELMOD3Q96FG2 381 aa4.46□□□□□ -1.7
SMCHD1-204ENST00000581226 TIGD1Q96MW7 591 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms