RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 TBC1D3DA0A087WVF3 549 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 TBC1D3IA0A087WXS9 549 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 TBC1D3EA0A087X179 549 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 TBC1D3KA0A087X1G2 549 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 FAM237BA0A1B0GVD1 139 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 TBC1D3FA6NER0 549 aaPredicted RBP10.17□□□□□ -0.78
SS18-210ENST00000578700 LRRC72A6NJI9 287 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 FAM159BA6NKW6 160 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 CYSRT1A8MQ03 144 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 TBC1D3LB9A6J9 549 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 J3QKU1 62 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 ATP9BO43861 1147 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 USP1O94782 785 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 PEX11BO96011 259 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 SNRPAP09012 282 aaKnown RBP10.17□□□□□ -0.78
SS18-210ENST00000578700 TBC1D3HP0C7X1 549 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 C7P10643 843 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 CDK4P11802 303 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 SLC8A1P32418 973 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 CD86P42081 329 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 ARRB1P49407 418 aaPredicted RBP10.17□□□□□ -0.78
SS18-210ENST00000578700 NUMBP49757 651 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 WNT3AP56704 352 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 MGAT5Q09328 741 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 SFSWAPQ12872 951 aaKnown RBP10.17□□□□□ -0.78
SS18-210ENST00000578700 FRG1Q14331 258 aaKnown RBP10.17□□□□□ -0.78
SS18-210ENST00000578700 CRYMQ14894 314 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 RTP5Q14D33 572 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 CST6Q15828 149 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 SLC14A2Q15849 920 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 PCSK7Q16549 785 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 TNFAIP8L3Q5GJ75 292 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 ARTNQ5T4W7 220 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 TBC1D3GQ6DHY5 549 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 TBC1D3CQ6IPX1 549 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 RETSATQ6NUM9 610 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 NLRP9Q7RTR0 991 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 EXOC3L1Q86VI1 746 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 TAX1BP1Q86VP1 789 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 KLHDC8BQ8IXV7 354 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 TBC1D3Q8IZP1 549 aaPredicted RBP10.17□□□□□ -0.78
SS18-210ENST00000578700 MPP5Q8N3R9 675 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 LSM14AQ8ND56 463 aaKnown RBP10.17□□□□□ -0.78
SS18-210ENST00000578700 OR7D4Q8NG98 312 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 OR2T34Q8NGX1 318 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 SPATA22Q8NHS9 363 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 SLC44A1Q8WWI5 657 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 ZNF669Q96BR6 464 aaPredicted RBP10.17□□□□□ -0.78
SS18-210ENST00000578700 APOL2Q9BQE5 337 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 WDR83Q9BRX9 315 aaKnown RBP10.17□□□□□ -0.78
SS18-210ENST00000578700 DHRS4Q9BTZ2 278 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 IQCGQ9H095 443 aaKnown RBP10.17□□□□□ -0.78
SS18-210ENST00000578700 RSPH9Q9H1X1 276 aaPredicted RBP10.17□□□□□ -0.78
SS18-210ENST00000578700 CTNNAL1Q9UBT7 734 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 CLCA2Q9UQC9 943 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 SPTA1P02549 2419 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 BOD1L1Q8NFC6 3051 aa10.17□□□□□ -0.78
SS18-210ENST00000578700 COL12A1Q99715 3063 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 A0A0D9SEW6 157 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 TEX51A0A1B0GUA7 166 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 A0A1W2PR77 199 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 TMEM120BA0PK00 339 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 HEATR9A2RTY3 570 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 TLR4O00206 839 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 SHOX2O60902 331 aaPredicted RBP10.16□□□□□ -0.78
SS18-210ENST00000578700 SDC3O75056 442 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 MT-CYBP00156 380 aaPredicted RBP10.16□□□□□ -0.78
SS18-210ENST00000578700 CKMT2P17540 419 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 ADRA1DP25100 572 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 EPHA8P29322 1005 aaPredicted RBP10.16□□□□□ -0.78
SS18-210ENST00000578700 MAT2AP31153 395 aaKnown RBP10.16□□□□□ -0.78
SS18-210ENST00000578700 CSKP41240 450 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 PSMD8P48556 350 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 SERPINH1P50454 418 aaKnown RBP10.16□□□□□ -0.78
SS18-210ENST00000578700 CRADDP78560 199 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 GUCY1A3Q02108 690 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 SLC12A1Q13621 1099 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 SEPT6Q14141 434 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 FAM182AQ5T1J6 154 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 CERCAMQ5T4B2 595 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 ARHGAP40Q5TG30 622 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 PDPK2PQ6A1A2 396 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 USP30Q70CQ3 517 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 ZNF771Q7L3S4 317 aaPredicted RBP10.16□□□□□ -0.78
SS18-210ENST00000578700 KIAA0907Q7Z7F0 614 aaPredicted RBP10.16□□□□□ -0.78
SS18-210ENST00000578700 TRABD2AQ86V40 505 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 SPACA3Q8IXA5 215 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 PAF1Q8N7H5 531 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 DCAF4L2Q8NA75 395 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 SNIP1Q8TAD8 396 aaKnown RBP10.16□□□□□ -0.78
SS18-210ENST00000578700 DCAKDQ8WVC6 231 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 CENPTQ96BT3 561 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 MYEOVQ96EZ4 313 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 CERS2Q96G23 380 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 SGSM3Q96HU1 749 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 PSKH2Q96QS6 385 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 SEMA3CQ99985 751 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 GORASP1Q9BQQ3 440 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 PDFQ9HBH1 243 aa10.16□□□□□ -0.78
SS18-210ENST00000578700 MRM3Q9HC36 420 aaKnown RBP10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms