RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 PPFIA2O75334 1257 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 SLC4A1P02730 911 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 CELA2BP08218 269 aaPredicted RBP13.3□□□□□ -0.28
CLK3-216ENST00000564468 STIP1P31948 543 aaKnown RBP13.3□□□□□ -0.28
CLK3-216ENST00000564468 INSM1Q01101 510 aaPredicted RBP13.3□□□□□ -0.28
CLK3-216ENST00000564468 LRP8Q14114 963 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 PARP6Q2NL67 630 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 ZNF569Q5MCW4 686 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 FAM182AQ5T1J6 154 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 GUSBP11Q6P575 273 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 OGFOD3Q6PK18 319 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 DOK6Q6PKX4 331 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 C19orf48Q6RUI8 117 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 ARHGEF18Q6ZSZ5 1173 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 GALNT13Q8IUC8 556 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 SLC25A41Q8N5S1 370 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 MAIP1Q8WWC4 291 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 SCARF2Q96GP6 870 aaPredicted RBP13.3□□□□□ -0.28
CLK3-216ENST00000564468 PLEKHG4BQ96PX9 1271 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 OR2M4Q96R27 311 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 WDR24Q96S15 920 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 AGAP2Q99490 1192 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 FAM118BQ9BPY3 351 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 DPEP2Q9H4A9 486 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 C10orf88Q9H8K7 445 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 SIRPGQ9P1W8 387 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 FEZ2Q9UHY8 353 aaPredicted RBP13.3□□□□□ -0.28
CLK3-216ENST00000564468 CLCA2Q9UQC9 943 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 PPP2R2CQ9Y2T4 447 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 IGSF10Q6WRI0 2623 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 GPR89AB7ZAQ6 455 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 F5H423 210 aaPredicted RBP13.29□□□□□ -0.28
CLK3-216ENST00000564468 ZW10O43264 779 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 SLC25A14O95258 325 aaPredicted RBP13.29□□□□□ -0.28
CLK3-216ENST00000564468 MT-CO3P00414 261 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 GPR89BP0CG08 455 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 MYF5P13349 255 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 PSMB4P28070 264 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 ACTN2P35609 894 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 PDE1BQ01064 536 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 TCEA2Q15560 299 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 P3H1Q32P28 736 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 ALS2CLQ60I27 953 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 RANBP10Q6VN20 620 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 GLT6D1Q7Z4J2 308 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 SLC13A5Q86YT5 568 aaPredicted RBP13.29□□□□□ -0.28
CLK3-216ENST00000564468 GPR26Q8NDV2 337 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 GPR156Q8NFN8 814 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 SLC35B2Q8TB61 432 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 CCDC110Q8TBZ0 833 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 DTX3LQ8TDB6 740 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 BLOC1S5Q8TDH9 187 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 GRAMD1AQ96CP6 724 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 EID2BQ96D98 161 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 DEPDC7Q96QD5 511 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 FICDQ9BVA6 458 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 SUDS3Q9H7L9 328 aaPredicted RBP13.29□□□□□ -0.28
CLK3-216ENST00000564468 TMEM98Q9Y2Y6 226 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 PKP3Q9Y446 797 aa13.29□□□□□ -0.28
CLK3-216ENST00000564468 ZNF106Q9H2Y7 1883 aaKnown RBP13.29□□□□□ -0.28
CLK3-216ENST00000564468 FAM149AA5PLN7 773 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 TRABD2BA6NFA1 517 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 C2orf81A6NN90 581 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 FADS2P1A8MWK0 482 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 TCEA3O75764 348 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 AGTP01019 485 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 CAPNS1P04632 268 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 PNLIPP16233 465 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 GLB1P16278 677 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 BPIP17213 487 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 ADCY8P40145 1251 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 CHRNA4P43681 627 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 POLD2P49005 469 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 CTBSQ01459 385 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 TARDBPQ13148 414 aaKnown RBP eCLIP13.28□□□□□ -0.28
CLK3-216ENST00000564468 C14orf28Q4W4Y0 310 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 PYCR3Q53H96 274 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 SOWAHCQ53LP3 525 aaPredicted RBP13.28□□□□□ -0.28
CLK3-216ENST00000564468 KCTD16Q68DU8 428 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 NYAP1Q6ZVC0 841 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 TRIM74Q86UV6 250 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 PHYKPLQ8IUZ5 450 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 DCBLD1Q8N8Z6 715 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 FAM71DQ8N9W8 422 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 KYQ8NBH2 561 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 GLYATL1Q969I3 302 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 NXPE2Q96DL1 559 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 VPS35Q96QK1 796 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 NRSN2Q9GZP1 204 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 TRIM39Q9HCM9 518 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 IL17CQ9P0M4 197 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 TAAR2Q9P1P5 351 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 ZNHIT2Q9UHR6 403 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 CNOT6Q9ULM6 557 aaKnown RBP13.28□□□□□ -0.28
CLK3-216ENST00000564468 R3HDM2Q9Y2K5 976 aaKnown RBP13.28□□□□□ -0.28
CLK3-216ENST00000564468 SPO11Q9Y5K1 396 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 CELSR3Q9NYQ7 3312 aa13.28□□□□□ -0.28
CLK3-216ENST00000564468 KIF26BQ2KJY2 2108 aa13.27□□□□□ -0.28
CLK3-216ENST00000564468 B4DGG1 531 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 AURKAO14965 403 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms