RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 DNASE1L3Q13609 305 aa17.65■□□□□ 0.42
TSPAN3-208ENST00000560514 KIR2DS5Q14953 304 aa17.65■□□□□ 0.42
TSPAN3-208ENST00000560514 ARMC12Q5T9G4 340 aa17.65■□□□□ 0.42
TSPAN3-208ENST00000560514 CYB5D1Q6P9G0 228 aa17.65■□□□□ 0.42
TSPAN3-208ENST00000560514 CLEC17AQ6ZS10 378 aa17.65■□□□□ 0.42
TSPAN3-208ENST00000560514 TECPR1Q7Z6L1 1165 aa17.65■□□□□ 0.42
TSPAN3-208ENST00000560514 ARHGAP12Q8IWW6 846 aa17.65■□□□□ 0.42
TSPAN3-208ENST00000560514 EXD1Q8NHP7 514 aa17.65■□□□□ 0.42
TSPAN3-208ENST00000560514 PRR7Q8TB68 274 aa17.65■□□□□ 0.42
TSPAN3-208ENST00000560514 ELMO2Q96JJ3 720 aa17.65■□□□□ 0.42
TSPAN3-208ENST00000560514 C9orf72Q96LT7 481 aa17.65■□□□□ 0.42
TSPAN3-208ENST00000560514 NSMCE3Q96MG7 304 aa17.65■□□□□ 0.42
TSPAN3-208ENST00000560514 NUDCD1Q96RS6 583 aa17.65■□□□□ 0.42
TSPAN3-208ENST00000560514 TBC1D10AQ9BXI6 508 aa17.65■□□□□ 0.42
TSPAN3-208ENST00000560514 RCOR3Q9P2K3 495 aaPredicted RBP17.65■□□□□ 0.42
TSPAN3-208ENST00000560514 CPNE7Q9UBL6 633 aa17.65■□□□□ 0.42
TSPAN3-208ENST00000560514 TBC1D29Q9UFV1 150 aa17.65■□□□□ 0.42
TSPAN3-208ENST00000560514 KCNK6Q9Y257 313 aa17.65■□□□□ 0.42
TSPAN3-208ENST00000560514 MN1Q10571 1320 aaPredicted RBP17.65■□□□□ 0.42
TSPAN3-208ENST00000560514 LRCH4O75427 683 aa17.64■□□□□ 0.41
TSPAN3-208ENST00000560514 RASSF9O75901 435 aa17.64■□□□□ 0.41
TSPAN3-208ENST00000560514 RNF224P0DH78 156 aa17.64■□□□□ 0.41
TSPAN3-208ENST00000560514 CTPS1P17812 591 aa17.64■□□□□ 0.41
TSPAN3-208ENST00000560514 COL8A1P27658 744 aa17.64■□□□□ 0.41
TSPAN3-208ENST00000560514 DCTP40126 519 aa17.64■□□□□ 0.41
TSPAN3-208ENST00000560514 SEPHS1P49903 392 aa17.64■□□□□ 0.41
TSPAN3-208ENST00000560514 POLR2FP61218 127 aaKnown RBP17.64■□□□□ 0.41
TSPAN3-208ENST00000560514 RPL7AP62424 266 aaKnown RBP17.64■□□□□ 0.41
TSPAN3-208ENST00000560514 CLEC16AQ2KHT3 1053 aa17.64■□□□□ 0.41
TSPAN3-208ENST00000560514 EIF2S3LQ2VIR3 472 aaKnown RBP17.64■□□□□ 0.41
TSPAN3-208ENST00000560514 NADK2Q4G0N4 442 aa17.64■□□□□ 0.41
TSPAN3-208ENST00000560514 PPP6R3Q5H9R7 873 aaPredicted RBP17.64■□□□□ 0.41
TSPAN3-208ENST00000560514 RFX8Q6ZV50 586 aa17.64■□□□□ 0.41
TSPAN3-208ENST00000560514 NSMCE1Q8WV22 266 aa17.64■□□□□ 0.41
TSPAN3-208ENST00000560514 SCAMP4Q969E2 229 aa17.64■□□□□ 0.41
TSPAN3-208ENST00000560514 PCDHB18PQ96TA0 734 aa17.64■□□□□ 0.41
TSPAN3-208ENST00000560514 NOD2Q9HC29 1040 aa17.64■□□□□ 0.41
TSPAN3-208ENST00000560514 ACSS2Q9NR19 701 aa17.64■□□□□ 0.41
TSPAN3-208ENST00000560514 PRKAB1Q9Y478 270 aa17.64■□□□□ 0.41
TSPAN3-208ENST00000560514 PCDHGA6Q9Y5G7 932 aa17.64■□□□□ 0.41
TSPAN3-208ENST00000560514 SHANK1Q9Y566 2161 aa17.64■□□□□ 0.41
TSPAN3-208ENST00000560514 ZNF106Q9H2Y7 1883 aaKnown RBP17.63■□□□□ 0.41
TSPAN3-208ENST00000560514 C21orf140B9A014 251 aa17.63■□□□□ 0.41
TSPAN3-208ENST00000560514 PGLSO95336 258 aa17.63■□□□□ 0.41
TSPAN3-208ENST00000560514 SOD1P00441 154 aa17.63■□□□□ 0.41
TSPAN3-208ENST00000560514 ACP5P13686 325 aa17.63■□□□□ 0.41
TSPAN3-208ENST00000560514 F3P13726 295 aa17.63■□□□□ 0.41
TSPAN3-208ENST00000560514 AMD1P17707 334 aa17.63■□□□□ 0.41
TSPAN3-208ENST00000560514 VARSP26640 1264 aaKnown RBP17.63■□□□□ 0.41
TSPAN3-208ENST00000560514 GFERP55789 205 aa17.63■□□□□ 0.41
TSPAN3-208ENST00000560514 TRAF2Q12933 501 aa17.63■□□□□ 0.41
TSPAN3-208ENST00000560514 ERMARDQ5T6L9 678 aa17.63■□□□□ 0.41
TSPAN3-208ENST00000560514 LRRC66Q68CR7 880 aa17.63■□□□□ 0.41
TSPAN3-208ENST00000560514 PHYKPLQ8IUZ5 450 aa17.63■□□□□ 0.41
TSPAN3-208ENST00000560514 THAP4Q8WY91 577 aa17.63■□□□□ 0.41
TSPAN3-208ENST00000560514 TGM7Q96PF1 710 aa17.63■□□□□ 0.41
TSPAN3-208ENST00000560514 MCCC1Q96RQ3 725 aaPredicted RBP17.63■□□□□ 0.41
TSPAN3-208ENST00000560514 TRIM55Q9BYV6 548 aa17.63■□□□□ 0.41
TSPAN3-208ENST00000560514 NLRC4Q9NPP4 1024 aa17.63■□□□□ 0.41
TSPAN3-208ENST00000560514 SLAMF7Q9NQ25 335 aa17.63■□□□□ 0.41
TSPAN3-208ENST00000560514 VPS18Q9P253 973 aa17.63■□□□□ 0.41
TSPAN3-208ENST00000560514 G3BP2Q9UN86 482 aaKnown RBP17.63■□□□□ 0.41
TSPAN3-208ENST00000560514 CENPEQ02224 2701 aa17.63■□□□□ 0.41
TSPAN3-208ENST00000560514 LILRA5A6NI73 299 aa17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 TOX3O15405 576 aaPredicted RBP17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 ATP1A1P05023 1023 aaKnown RBP17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 ZNF30P17039 623 aa17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 TYRP1P17643 537 aa17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 TNFAIP3P21580 790 aa17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 EEF1GP26641 437 aaKnown RBP17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 EPHB1P54762 984 aa17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 SH3BP2P78314 561 aa17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 INPP5JQ15735 1006 aaPredicted RBP17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 DPCR1Q3MIW9 517 aa17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 RALGPS1Q5JS13 557 aa17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 RFLNAQ6ZTI6 216 aa17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 MON1BQ7L1V2 547 aa17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 ZNF765Q7L2R6 523 aa17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 NLRP8Q86W28 1048 aa17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 PPP1R3BQ86XI6 285 aa17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 TRIM48Q8IWZ4 208 aa17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 NPWQ8N729 165 aa17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 CT55Q8WUE5 264 aa17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 COX14Q96I36 57 aa17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 RIOK2Q9BVS4 552 aaKnown RBP17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 NUP62CLQ9H1M0 184 aa17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 ACTL8Q9H568 366 aa17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 RMI1Q9H9A7 625 aa17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 LHX9Q9NQ69 397 aa17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 PCSK1NQ9UHG2 260 aa17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 PCDHGA9Q9Y5G4 932 aaKnown RBP17.62■□□□□ 0.41
TSPAN3-208ENST00000560514 TCP11X1B4DZS4 312 aa17.61■□□□□ 0.41
TSPAN3-208ENST00000560514 DNAJC6O75061 913 aa17.61■□□□□ 0.41
TSPAN3-208ENST00000560514 SPAG6O75602 509 aa17.61■□□□□ 0.41
TSPAN3-208ENST00000560514 UBXN7O94888 489 aa17.61■□□□□ 0.41
TSPAN3-208ENST00000560514 VIPP01282 170 aa17.61■□□□□ 0.41
TSPAN3-208ENST00000560514 C9P02748 559 aa17.61■□□□□ 0.41
TSPAN3-208ENST00000560514 TPM2P07951 284 aa17.61■□□□□ 0.41
TSPAN3-208ENST00000560514 PSMA2P25787 234 aa17.61■□□□□ 0.41
TSPAN3-208ENST00000560514 CCL11P51671 97 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms