RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 PILRBQ9UKJ0 227 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 NFU1Q9UMS0 254 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 SMG5Q9UPR3 1016 aaKnown RBP9.18□□□□□ -0.94
LDLR-210ENST00000559340 VPS9D1Q9Y2B5 631 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 KCTD3Q9Y597 815 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 TEX264Q9Y6I9 313 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 GOLGA4Q13439 2230 aaKnown RBP9.17□□□□□ -0.94
LDLR-210ENST00000559340 TMEM131Q92545 1883 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 GPR89AB7ZAQ6 455 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 CFAP99D6REC4 459 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 TLR4O00206 839 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 VILLO15195 856 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 DFNA5O60443 496 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 FOXD2O60548 495 aaPredicted RBP9.17□□□□□ -0.94
LDLR-210ENST00000559340 SLC25A14O95258 325 aaPredicted RBP9.17□□□□□ -0.94
LDLR-210ENST00000559340 PRAMEF1O95521 474 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 LMNAP02545 664 aaKnown RBP9.17□□□□□ -0.94
LDLR-210ENST00000559340 GPR89BP0CG08 455 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 THEGLP0DJG4 465 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 GM2AP17900 193 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 MAOBP27338 520 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 NMBRP28336 390 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 PMLP29590 882 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 PHBP35232 272 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 IGFALSP35858 605 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 TTPAP49638 278 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 BLKP51451 505 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 KIAA1024LP59773 190 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 GTF2H3Q13889 308 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 FRG1Q14331 258 aaKnown RBP9.17□□□□□ -0.94
LDLR-210ENST00000559340 INPP5AQ14642 412 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 TRADDQ15628 312 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 CHRNA6Q15825 494 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 KCTD19Q17RG1 926 aaPredicted RBP9.17□□□□□ -0.94
LDLR-210ENST00000559340 MAP9Q49MG5 647 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 PEAR1Q5VY43 1037 aaPredicted RBP9.17□□□□□ -0.94
LDLR-210ENST00000559340 WDR93Q6P2C0 686 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 ZNF449Q6P9G9 518 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 IL27RAQ6UWB1 636 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 FAM151BQ6UXP7 276 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 CCNI2Q6ZMN8 369 aaPredicted RBP9.17□□□□□ -0.94
LDLR-210ENST00000559340 Q6ZSR6 202 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 CYS1Q717R9 158 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 TAS2R42Q7RTR8 314 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 PTAR1Q7Z6K3 402 aaPredicted RBP9.17□□□□□ -0.94
LDLR-210ENST00000559340 RELL1Q8IUW5 271 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 PHYKPLQ8IUZ5 450 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 OTUD6BQ8N6M0 293 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 LRRN4CLQ8ND94 238 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 FBXO36Q8NEA4 188 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 GDAP1Q8TB36 358 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 BTN2A2Q8WVV5 523 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 CDKL2Q92772 493 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 SCAMP4Q969E2 229 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 GLYATL1Q969I3 302 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 CFAP36Q96G28 342 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 BMFQ96LC9 184 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 WDR92Q96MX6 357 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 SLC6A18Q96N87 628 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 TCF12Q99081 682 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 MYOCQ99972 504 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 NUSAP1Q9BXS6 441 aaKnown RBP9.17□□□□□ -0.94
LDLR-210ENST00000559340 TEX101Q9BY14 249 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 RMI1Q9H9A7 625 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 TRIM39Q9HCM9 518 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 TM9SF3Q9HD45 589 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 RRAGDQ9NQL2 400 aaPredicted RBP9.17□□□□□ -0.94
LDLR-210ENST00000559340 MBNL1Q9NR56 388 aaKnown RBP9.17□□□□□ -0.94
LDLR-210ENST00000559340 TREX1Q9NSU2 369 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 CATSPERZQ9NTU4 200 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 SMOXQ9NWM0 555 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 NSMCE4AQ9NXX6 385 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 SLC6A14Q9UN76 642 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 CHMP2BQ9UQN3 213 aa9.17□□□□□ -0.94
LDLR-210ENST00000559340 FNDC3AQ9Y2H6 1198 aaKnown RBP9.17□□□□□ -0.94
LDLR-210ENST00000559340 A0A0U1RQS6 177 aa9.16□□□□□ -0.94
LDLR-210ENST00000559340 A0A1W2PR77 199 aa9.16□□□□□ -0.94
LDLR-210ENST00000559340 CCDC78A2IDD5 438 aa9.16□□□□□ -0.94
LDLR-210ENST00000559340 CCDC162PA2VCL2 907 aa9.16□□□□□ -0.94
LDLR-210ENST00000559340 POM121BA6NF01 834 aa9.16□□□□□ -0.94
LDLR-210ENST00000559340 QSOX1O00391 747 aa9.16□□□□□ -0.94
LDLR-210ENST00000559340 TNFRSF10CO14798 259 aa9.16□□□□□ -0.94
LDLR-210ENST00000559340 KHNYNO15037 678 aaKnown RBP9.16□□□□□ -0.94
LDLR-210ENST00000559340 RAD51BO15315 384 aa9.16□□□□□ -0.94
LDLR-210ENST00000559340 TP73O15350 636 aa9.16□□□□□ -0.94
LDLR-210ENST00000559340 CD3EAPO15446 510 aaKnown RBP9.16□□□□□ -0.94
LDLR-210ENST00000559340 VEGFDO43915 354 aa9.16□□□□□ -0.94
LDLR-210ENST00000559340 LRP3O75074 770 aa9.16□□□□□ -0.94
LDLR-210ENST00000559340 NDUFS3O75489 264 aa9.16□□□□□ -0.94
LDLR-210ENST00000559340 VAPBO95292 243 aa9.16□□□□□ -0.94
LDLR-210ENST00000559340 ASMTLO95671 621 aa9.16□□□□□ -0.94
LDLR-210ENST00000559340 GOT2P00505 430 aaKnown RBP9.16□□□□□ -0.94
LDLR-210ENST00000559340 MYCLP1P12525 358 aaPredicted RBP9.16□□□□□ -0.94
LDLR-210ENST00000559340 MSH3P20585 1137 aa9.16□□□□□ -0.94
LDLR-210ENST00000559340 CLDN2P57739 230 aa9.16□□□□□ -0.94
LDLR-210ENST00000559340 PFN3P60673 137 aa9.16□□□□□ -0.94
LDLR-210ENST00000559340 XIAPP98170 497 aa9.16□□□□□ -0.94
LDLR-210ENST00000559340 CDK3Q00526 305 aa9.16□□□□□ -0.94
LDLR-210ENST00000559340 NFATC2Q13469 925 aa9.16□□□□□ -0.94
LDLR-210ENST00000559340 PEX6Q13608 980 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms