RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 PRDM8Q9NQV8 689 aa12.55□□□□□ -0.4
SHMT2-223ENST00000556689 TAS2R14Q9NYV8 317 aa12.55□□□□□ -0.4
SHMT2-223ENST00000556689 CNOT8Q9UFF9 292 aaKnown RBP12.55□□□□□ -0.4
SHMT2-223ENST00000556689 PRKAB1Q9Y478 270 aa12.55□□□□□ -0.4
SHMT2-223ENST00000556689 TMEM191CA6NGB0 347 aa12.54□□□□□ -0.4
SHMT2-223ENST00000556689 TMCO5BA8MYB1 307 aa12.54□□□□□ -0.4
SHMT2-223ENST00000556689 H3BRJ5 948 aa12.54□□□□□ -0.4
SHMT2-223ENST00000556689 SNX2O60749 519 aa12.54□□□□□ -0.4
SHMT2-223ENST00000556689 VPS4BO75351 444 aa12.54□□□□□ -0.4
SHMT2-223ENST00000556689 PDHA1P08559 390 aa12.54□□□□□ -0.4
SHMT2-223ENST00000556689 SLC2A4P14672 509 aa12.54□□□□□ -0.4
SHMT2-223ENST00000556689 ZNF30P17039 623 aa12.54□□□□□ -0.4
SHMT2-223ENST00000556689 MMP13P45452 471 aa12.54□□□□□ -0.4
SHMT2-223ENST00000556689 FOXM1Q08050 763 aa12.54□□□□□ -0.4
SHMT2-223ENST00000556689 TMCO3Q6UWJ1 677 aa12.54□□□□□ -0.4
SHMT2-223ENST00000556689 CYP4V2Q6ZWL3 525 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-223ENST00000556689 HERPUD2Q9BSE4 406 aa12.54□□□□□ -0.4
SHMT2-223ENST00000556689 RIOK2Q9BVS4 552 aaKnown RBP12.54□□□□□ -0.4
SHMT2-223ENST00000556689 TBC1D10AQ9BXI6 508 aa12.54□□□□□ -0.4
SHMT2-223ENST00000556689 CPNE7Q9UBL6 633 aa12.54□□□□□ -0.4
SHMT2-223ENST00000556689 CROTQ9UKG9 612 aa12.54□□□□□ -0.4
SHMT2-223ENST00000556689 VPS4AQ9UN37 437 aa12.54□□□□□ -0.4
SHMT2-223ENST00000556689 POLHQ9Y253 713 aa12.54□□□□□ -0.4
SHMT2-223ENST00000556689 KIR2DS5A0A0G2JLQ3 304 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 A0A0G2JNG1 304 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 OR5K4A6NMS3 321 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 KIR2DS3K7RE56 304 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 FZD6O60353 706 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 DNAJC6O75061 913 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 KATNA1O75449 491 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 ATP1A1P05023 1023 aaKnown RBP12.53□□□□□ -0.4
SHMT2-223ENST00000556689 FERP16591 822 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 ZNF28P17035 718 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 AMPD1P23109 780 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 ARL4AP40617 200 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 STC1P52823 247 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 EPHB1P54762 984 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 CDH6P55285 790 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 UBXN1Q04323 297 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 ITKQ08881 620 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 KIR2DS5Q14953 304 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 CCDC183Q5T5S1 534 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 FHL5Q5TD97 284 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 HIST2H2BCQ6DN03 193 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 LYSMD3Q7Z3D4 306 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 IRF2BP2Q7Z5L9 587 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 ATPAF2Q8N5M1 289 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 AVL9Q8NBF6 648 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 C9orf72Q96LT7 481 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 SMIM14Q96QK8 99 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 RMI1Q9H9A7 625 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 NT5MQ9NPB1 228 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 ETNK2Q9NVF9 386 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 FANCLQ9NW38 375 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 SIDT1Q9NXL6 827 aaKnown RBP12.53□□□□□ -0.4
SHMT2-223ENST00000556689 VPS18Q9P253 973 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 PLEKHB1Q9UF11 243 aaPredicted RBP12.53□□□□□ -0.4
SHMT2-223ENST00000556689 KCND3Q9UK17 655 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 TLK1Q9UKI8 766 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 DNPEPQ9ULA0 475 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 CNOT6Q9ULM6 557 aaKnown RBP12.53□□□□□ -0.4
SHMT2-223ENST00000556689 KCNK6Q9Y257 313 aa12.53□□□□□ -0.4
SHMT2-223ENST00000556689 PCYT1BQ9Y5K3 369 aaPredicted RBP12.53□□□□□ -0.4
SHMT2-223ENST00000556689 A0A0J9YYE9 177 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 A6NCN8 305 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 TTLL8A6PVC2 850 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 ATMINO43313 823 aaPredicted RBP12.52□□□□□ -0.41
SHMT2-223ENST00000556689 LRCH4O75427 683 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 RFPL1O75677 317 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 AGFG2O95081 481 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 TRBC1P01850 177 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 FURINP09958 794 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 ANKRD34CP0C6C1 535 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 CCNYL3P0C7X3 344 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 ATP1A3P13637 1013 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 ACP5P13686 325 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 F3P13726 295 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 IL11RAQ14626 422 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 DPYSL2Q16555 572 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 BOLA3Q53S33 107 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 CAVIN1Q6NZI2 390 aaKnown RBP12.52□□□□□ -0.41
SHMT2-223ENST00000556689 POLNQ7Z5Q5 900 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 RASGRP3Q8IV61 690 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 RAVER1Q8IY67 606 aaKnown RBP12.52□□□□□ -0.41
SHMT2-223ENST00000556689 TEX26Q8N6G2 289 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 EFCAB3Q8N7B9 438 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 GALNT6Q8NCL4 622 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 ANKRD20A12PQ8NF67 263 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 STAMBPL1Q96FJ0 436 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 OR6C1Q96RD1 312 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 TRIM7Q9C029 511 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 OAS3Q9Y6K5 1087 aaKnown RBP12.52□□□□□ -0.41
SHMT2-223ENST00000556689 NBASA2RRP1 2371 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 NBPF19A0A087WUL8 3843 aa12.52□□□□□ -0.41
SHMT2-223ENST00000556689 TEX15Q9BXT5 2789 aa12.51□□□□□ -0.41
SHMT2-223ENST00000556689 PIPSLA2A3N6 862 aa12.51□□□□□ -0.41
SHMT2-223ENST00000556689 LRRC10BA6NIK2 292 aa12.51□□□□□ -0.41
SHMT2-223ENST00000556689 LGALS16A8MUM7 142 aa12.51□□□□□ -0.41
SHMT2-223ENST00000556689 TOX3O15405 576 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-223ENST00000556689 GRID2O43424 1007 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms