RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 KCTD3Q9Y597 815 aa11.14□□□□□ -0.63
SHMT2-220ENST00000555634 PCDHB1Q9Y5F3 818 aa11.14□□□□□ -0.63
SHMT2-220ENST00000555634 COMMD10Q9Y6G5 202 aa11.14□□□□□ -0.63
SHMT2-220ENST00000555634 TECTAO75443 2155 aa11.14□□□□□ -0.63
SHMT2-220ENST00000555634 TLDC2A0PJX2 215 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 E5RI56 91 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 H3BMM5 538 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 CACNB4O00305 520 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-220ENST00000555634 CCL22O00626 93 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 TOR1BO14657 336 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 RGS16O15492 202 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-220ENST00000555634 PDGFBP01127 241 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-220ENST00000555634 KRT15P19012 456 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 MSH3P20585 1137 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 KELP23276 732 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 HTR1BP28222 390 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 MAT2AP31153 395 aaKnown RBP11.13□□□□□ -0.63
SHMT2-220ENST00000555634 PTGER3P43115 390 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 ITIH4Q14624 930 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 NUMA1Q14980 2115 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 AGERQ15109 404 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 TMED2Q15363 201 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 CHRNA6Q15825 494 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 CDKN3Q16667 212 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 TMEM259Q4ZIN3 620 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 HENMT1Q5T8I9 393 aaKnown RBP11.13□□□□□ -0.63
SHMT2-220ENST00000555634 GRTP1Q5TC63 336 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 TRMT10BQ6PF06 316 aaKnown RBP11.13□□□□□ -0.63
SHMT2-220ENST00000555634 BMP8AQ7Z5Y6 402 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 LONP2Q86WA8 852 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 C1orf210Q8IVY1 113 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 NXPE1Q8N323 547 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 DTWD2Q8NBA8 298 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 GPR26Q8NDV2 337 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 CADM4Q8NFZ8 388 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 FAM174AQ8TBP5 190 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 VOPP1Q96AW1 172 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 SKA1Q96BD8 255 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 MRRFQ96E11 262 aaKnown RBP11.13□□□□□ -0.63
SHMT2-220ENST00000555634 VPS39Q96JC1 886 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 SMIM14Q96QK8 99 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 TRIM56Q9BRZ2 755 aaKnown RBP11.13□□□□□ -0.63
SHMT2-220ENST00000555634 GPR174Q9BXC1 333 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 SUDS3Q9H7L9 328 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-220ENST00000555634 IL26Q9NPH9 171 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 IL1RAPL1Q9NZN1 696 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 ZNF180Q9UJW8 692 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 FBXO5Q9UKT4 447 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 FBXO4Q9UKT5 387 aa11.13□□□□□ -0.63
SHMT2-220ENST00000555634 SPAG17Q6Q759 2223 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 TTC28Q96AY4 2481 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 IGHV1OR15-9A0A0B4J2B8 117 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 A6NNZ2 444 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 GPR89AB7ZAQ6 455 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 GOLGA8KD6RF30 607 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 PRAMEF26H0Y7S4 382 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 GOLGA8TH3BQL2 631 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 SPINT1O43278 529 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 SLC25A14O95258 325 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-220ENST00000555634 GPR89BP0CG08 455 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 PSMA3P25788 255 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 ACRV1P26436 265 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 TEAD1P28347 426 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 FOXN2P32314 431 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 ACSL1P33121 698 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 NSG1P42857 185 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 ARCN1P48444 511 aaKnown RBP11.12□□□□□ -0.63
SHMT2-220ENST00000555634 SERPINB8P50452 374 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 ARSDP51689 593 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 CREB5Q02930 508 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 CSTF1Q05048 431 aaKnown RBP11.12□□□□□ -0.63
SHMT2-220ENST00000555634 PTPRCAPQ14761 206 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 EFTUD2Q15029 972 aaKnown RBP eCLIP11.12□□□□□ -0.634e-8■■■■■ 45.8
SHMT2-220ENST00000555634 PTPRRQ15256 657 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 IRF4Q15306 451 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 TYSND1Q2T9J0 566 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 TAF1BQ53T94 588 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-220ENST00000555634 SEL1L3Q68CR1 1132 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 PTRHD1Q6GMV3 140 aaKnown RBP11.12□□□□□ -0.63
SHMT2-220ENST00000555634 UGT3A1Q6NUS8 523 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 ADAMTSL4Q6UY14 1074 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 PACS1Q6VY07 963 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 LPCAT2Q7L5N7 544 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 CCDC91Q7Z6B0 441 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 WDR5BQ86VZ2 330 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 NLRP8Q86W28 1048 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 SERPINA9Q86WD7 417 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 GPATCH11Q8N954 259 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 C2CD4AQ8NCU7 369 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-220ENST00000555634 SLC44A1Q8WWI5 657 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 GLYATL1Q969I3 302 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 HIC2Q96JB3 615 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 ZNF514Q96K75 400 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-220ENST00000555634 ZIM3Q96PE6 472 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 PANX3Q96QZ0 392 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 RBBP8Q99708 897 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 C1QTNF2Q9BXJ5 285 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 ABCG8Q9H221 673 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 RHOJQ9H4E5 214 aa11.12□□□□□ -0.63
SHMT2-220ENST00000555634 ZDHHC3Q9NYG2 299 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms