RNA–Protein interactions for RNA: ENST00000553693.5

SCFD1-210, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 490 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-210ENST00000553693 C17orf77Q96MU5 243 aa3.81□□□□□ -1.8
SCFD1-210ENST00000553693 C1QTNF5Q9BXJ0 243 aa3.81□□□□□ -1.8
SCFD1-210ENST00000553693 PRKRIP1Q9H875 184 aaPredicted RBP3.81□□□□□ -1.8
SCFD1-210ENST00000553693 UPF2Q9HAU5 1272 aaKnown RBP3.81□□□□□ -1.8
SCFD1-210ENST00000553693 SLC6A13Q9NSD5 602 aa3.81□□□□□ -1.8
SCFD1-210ENST00000553693 POLG2Q9UHN1 485 aa3.81□□□□□ -1.8
SCFD1-210ENST00000553693 SARDHQ9UL12 918 aa3.81□□□□□ -1.8
SCFD1-210ENST00000553693 HS3ST1O14792 307 aa3.8□□□□□ -1.8
SCFD1-210ENST00000553693 SYNGR3O43761 229 aa3.8□□□□□ -1.8
SCFD1-210ENST00000553693 PCDH7O60245 1069 aa3.8□□□□□ -1.8
SCFD1-210ENST00000553693 ZNF23P17027 643 aa3.8□□□□□ -1.8
SCFD1-210ENST00000553693 CNTFP26441 200 aa3.8□□□□□ -1.8
SCFD1-210ENST00000553693 HOXC9P31274 260 aa3.8□□□□□ -1.8
SCFD1-210ENST00000553693 AMPHP49418 695 aa3.8□□□□□ -1.8
SCFD1-210ENST00000553693 CTCFP49711 727 aaPredicted RBP3.8□□□□□ -1.8
SCFD1-210ENST00000553693 EIF3BP55884 814 aaKnown RBP3.8□□□□□ -1.8
SCFD1-210ENST00000553693 PLIN5Q00G26 463 aa3.8□□□□□ -1.8
SCFD1-210ENST00000553693 PPIGQ13427 754 aaKnown RBP eCLIP3.8□□□□□ -1.85e-7■□□□□ 11.2
SCFD1-210ENST00000553693 FGFBP1Q14512 234 aa3.8□□□□□ -1.8
SCFD1-210ENST00000553693 DCST1Q5T197 706 aa3.8□□□□□ -1.8
SCFD1-210ENST00000553693 ZNF280DQ6N043 979 aa3.8□□□□□ -1.8
SCFD1-210ENST00000553693 ARHGAP11AQ6P4F7 1023 aa3.8□□□□□ -1.8
SCFD1-210ENST00000553693 GRAMD2BQ96HH9 432 aa3.8□□□□□ -1.8
SCFD1-210ENST00000553693 ZNF354BQ96LW1 612 aa3.8□□□□□ -1.8
SCFD1-210ENST00000553693 PCGF1Q9BSM1 259 aa3.8□□□□□ -1.8
SCFD1-210ENST00000553693 ASAH2Q9NR71 780 aa3.8□□□□□ -1.8
SCFD1-210ENST00000553693 ACSS1Q9NUB1 689 aaPredicted RBP3.8□□□□□ -1.8
SCFD1-210ENST00000553693 CHD1O14646 1710 aa3.8□□□□□ -1.8
SCFD1-210ENST00000553693 EIF4G3O43432 1585 aaKnown RBP3.8□□□□□ -1.8
SCFD1-210ENST00000553693 IGLV5-45A0A087WSX0 123 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 A0A1W2PQM1 296 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 BLOC1S5-TXNDC5H3BN57 136 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 HOXC11O43248 304 aaPredicted RBP3.79□□□□□ -1.8
SCFD1-210ENST00000553693 MAD2L1Q13257 205 aaPredicted RBP3.79□□□□□ -1.8
SCFD1-210ENST00000553693 BIRC3Q13489 604 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 DECR1Q16698 335 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 PRICKLE4Q2TBC4 344 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 SFMBT2Q5VUG0 894 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 OR7E24Q6IFN5 339 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 FAM171BQ6P995 826 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 SLC27A1Q6PCB7 646 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 PLEKHM3Q6ZWE6 761 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 DPPA4Q7L190 304 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 GSTA5Q7RTV2 222 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 BEST3Q8N1M1 668 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 OR52I2Q8NH67 350 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 NFKBIDQ8NI38 313 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 TAS1R2Q8TE23 839 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 TM9SF4Q92544 642 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 ZNF524Q96C55 264 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 LGALS12Q96DT0 336 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 LINGO1Q96FE5 620 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 STAMBPL1Q96FJ0 436 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 PCYT2Q99447 389 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 MOV10L1Q9BXT6 1211 aaKnown RBP3.79□□□□□ -1.8
SCFD1-210ENST00000553693 RANBP17Q9H2T7 1088 aaKnown RBP3.79□□□□□ -1.8
SCFD1-210ENST00000553693 SEBOXQ9HB31 216 aaPredicted RBP3.79□□□□□ -1.8
SCFD1-210ENST00000553693 HAO1Q9UJM8 370 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 FBXL2Q9UKC9 423 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 ACSL5Q9ULC5 683 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 KLHL20Q9Y2M5 609 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 TOPBP1Q92547 1522 aa3.79□□□□□ -1.8
SCFD1-210ENST00000553693 ZCWPW2A0A1B0GU75 182 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 IFNL4K9M1U5 179 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 TNFSF14O43557 240 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 SEC31AO94979 1220 aaKnown RBP3.78□□□□□ -1.8
SCFD1-210ENST00000553693 CAVIN2O95810 425 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 POLBP06746 335 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 AHRP35869 848 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 UBA7P41226 1012 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 RPL24P83731 157 aaKnown RBP3.78□□□□□ -1.8
SCFD1-210ENST00000553693 PTP4A2Q12974 167 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 GRIK2Q13002 908 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 ALG11Q2TAA5 492 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 COL28A1Q2UY09 1125 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 C14orf177Q52M58 125 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 LCE1FQ5T754 118 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 ZNF248Q8NDW4 579 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 OR5R1Q8NH85 324 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 APBB2Q92870 758 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 RHBDF1Q96CC6 855 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 HVCN1Q96D96 273 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 RNF125Q96EQ8 232 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 RRNAD1Q96FB5 475 aaKnown RBP3.78□□□□□ -1.8
SCFD1-210ENST00000553693 ACOX2Q99424 681 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 GFRA4Q9GZZ7 299 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 TFB2MQ9H5Q4 396 aaKnown RBP3.78□□□□□ -1.8
SCFD1-210ENST00000553693 LTB4R2Q9NPC1 389 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 PADI3Q9ULW8 664 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 MMP24Q9Y5R2 645 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 SNED1Q8TER0 1413 aa3.78□□□□□ -1.8
SCFD1-210ENST00000553693 NOTCH3Q9UM47 2321 aa3.77□□□□□ -1.81
SCFD1-210ENST00000553693 CTAGE9A4FU28 777 aa3.77□□□□□ -1.81
SCFD1-210ENST00000553693 RRN3P2A6NIE6 340 aa3.77□□□□□ -1.81
SCFD1-210ENST00000553693 SNAP23O00161 211 aa3.77□□□□□ -1.81
SCFD1-210ENST00000553693 EIF3DO15371 548 aaKnown RBP eCLIP3.77□□□□□ -1.81
SCFD1-210ENST00000553693 PRKNO60260 465 aaPredicted RBP3.77□□□□□ -1.81
SCFD1-210ENST00000553693 F9P00740 461 aa3.77□□□□□ -1.81
SCFD1-210ENST00000553693 ZNF883P0CG24 379 aa3.77□□□□□ -1.81
SCFD1-210ENST00000553693 CTAGE8P0CG41 777 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms