RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 SLC47A1Q96FL8 570 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 TRIM45Q9H8W5 580 aaPredicted RBP14.18□□□□□ -0.14
LIMS1-215ENST00000544547 RNF11Q9Y3C5 154 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 C10orf71Q711Q0 1435 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 SERPINB7O75635 380 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 VARSP26640 1264 aaKnown RBP14.17□□□□□ -0.14
LIMS1-215ENST00000544547 RCVRNP35243 200 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 GSK3BP49841 420 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 MAXP61244 160 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 SP2Q02086 613 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 ZNF484Q5JVG2 852 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 SLC26A9Q7LBE3 791 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 PQLC3Q8N755 202 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 C1orf127Q8N9H9 656 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 REPS2Q8NFH8 660 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 DNERQ8NFT8 737 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 IRGQQ8WZA9 623 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 MTFMTQ96DP5 389 aaKnown RBP14.17□□□□□ -0.14
LIMS1-215ENST00000544547 REXO5Q96IC2 774 aaKnown RBP14.17□□□□□ -0.14
LIMS1-215ENST00000544547 SYTL2Q9HCH5 934 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 MAGEE1Q9HCI5 957 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 WWOXQ9NZC7 414 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 CNTN6Q9UQ52 1028 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 ZSCAN5BA6NJL1 495 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 PRKD3O94806 890 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 HPCAL1P37235 193 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 FCHO2Q0JRZ9 810 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 ZNF280DQ6N043 979 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 TAS1R3Q7RTX0 852 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 ZNF605Q86T29 641 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 LUZP2Q86TE4 346 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 SLC44A2Q8IWA5 706 aaPredicted RBP14.17□□□□□ -0.14
LIMS1-215ENST00000544547 WDTC1Q8N5D0 677 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 PACRGLQ8N7B6 248 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 PSD4Q8NDX1 1056 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 KBTBD8Q8NFY9 601 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 KCNS3Q9BQ31 491 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 LPIN3Q9BQK8 851 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 NPLQ9BXD5 320 aaPredicted RBP14.17□□□□□ -0.14
LIMS1-215ENST00000544547 TLL2Q9Y6L7 1015 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 CILPO75339 1184 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 SIX3O95343 332 aaPredicted RBP14.17□□□□□ -0.14
LIMS1-215ENST00000544547 AP2A1O95782 977 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 GPD2P43304 727 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 GSTM4Q03013 218 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 TRIM69Q86WT6 500 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 HS6ST3Q8IZP7 471 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 TCAIMQ8N3R3 496 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 ROPN1LQ96C74 230 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 TMEM169Q96HH4 297 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 OSMRQ99650 979 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 STRA6Q9BX79 667 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 KAT8Q9H7Z6 458 aaKnown RBP14.17□□□□□ -0.14
LIMS1-215ENST00000544547 TMPRSS4Q9NRS4 437 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 RAPGEFL1Q9UHV5 662 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 TMX2-CTNND1H3BSU7 103 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 ABCB7O75027 752 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 ARL2P36404 184 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 NPTX1Q15818 432 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 TYSND1Q2T9J0 566 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 LRRC58Q96CX6 371 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 PPP1R2P1Q96PQ5 205 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 FUNDC2Q9BWH2 189 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 MTIF3Q9H2K0 278 aaKnown RBP14.17□□□□□ -0.14
LIMS1-215ENST00000544547 AKTIPQ9H8T0 292 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 SP140LQ9H930 580 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 TOR4AQ9NXH8 423 aa14.17□□□□□ -0.14
LIMS1-215ENST00000544547 SAMHD1Q9Y3Z3 626 aaKnown RBP14.17□□□□□ -0.14
LIMS1-215ENST00000544547 CCDC88AQ3V6T2 1871 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 PIPSLA2A3N6 862 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 H3BRB1 525 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 SLC22A2O15244 555 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 CPNE3O75131 537 aaKnown RBP14.16□□□□□ -0.14
LIMS1-215ENST00000544547 IGFBP5P24593 272 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 TMBIM6P55061 237 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 STXBP5Q5T5C0 1151 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 TYW3Q6IPR3 259 aaKnown RBP14.16□□□□□ -0.14
LIMS1-215ENST00000544547 CHERPQ8IWX8 916 aaKnown RBP14.16□□□□□ -0.14
LIMS1-215ENST00000544547 GALNT12Q8IXK2 581 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 WNT8BQ93098 351 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 ZNF778Q96MU6 729 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 ULBP1Q9BZM6 244 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 DCSTAMPQ9H295 470 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 REEP1Q9H902 201 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 IKZF3Q9UKT9 509 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 SH3BGRLO75368 114 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 USP17L7P0C7H9 530 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 ATF4P18848 351 aaPredicted RBP14.16□□□□□ -0.14
LIMS1-215ENST00000544547 PIK3CGP48736 1102 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 TXNL4AP83876 142 aaKnown RBP14.16□□□□□ -0.14
LIMS1-215ENST00000544547 LAPTM4AQ15012 233 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 ZDHHC17Q8IUH5 632 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 TMEM130Q8N3G9 435 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 CLHC1Q8NHS4 586 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 MZB1Q8WU39 189 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 BEX2Q9BXY8 128 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 ANKRD60Q9BZ19 345 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 OLAHQ9NV23 265 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 MAGEL2Q9UJ55 1249 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 PCDHB8Q9UN66 801 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms