RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 DCAF4L2Q8NA75 395 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 HMGCLL1Q8TB92 370 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 TNKS2Q9H2K2 1166 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 WDR41Q9HAD4 459 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 EFCAB1Q9HAE3 211 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 GIMAP2Q9UG22 337 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 LSM7Q9UK45 103 aaKnown RBP16.23■□□□□ 0.19
COL4A1-204ENST00000543140 SH3BP1Q9Y3L3 701 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 DNAJC15Q9Y5T4 150 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 OAS3Q9Y6K5 1087 aaKnown RBP16.23■□□□□ 0.19
COL4A1-204ENST00000543140 MAP3K7O43318 606 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 FZD6O60353 706 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 KERAO60938 352 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 FKBP6O75344 327 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 VPS26AO75436 327 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 LRG1P02750 347 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 DPP6P42658 865 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 THOP1P52888 689 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 AGKQ53H12 422 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 ARMC12Q5T9G4 340 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 FBXO39Q8N4B4 442 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 EEF1AKMT1Q8WVE0 214 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 CCDC97Q96F63 343 aaPredicted RBP16.23■□□□□ 0.19
COL4A1-204ENST00000543140 MYO19Q96H55 970 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 RPL10LQ96L21 214 aaKnown RBP16.23■□□□□ 0.19
COL4A1-204ENST00000543140 C2orf49Q9BVC5 232 aaPredicted RBP16.23■□□□□ 0.19
COL4A1-204ENST00000543140 SEMA4BQ9NPR2 832 aaPredicted RBP16.23■□□□□ 0.19
COL4A1-204ENST00000543140 TIMP1P01033 207 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 PYGLP06737 847 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 RAG1P15918 1043 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 PSMA3P25788 255 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 CD70P32970 193 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 AGTR2P50052 363 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 ATXN3P54252 364 aaPredicted RBP16.22■□□□□ 0.19
COL4A1-204ENST00000543140 ILF2Q12905 390 aaKnown RBP16.22■□□□□ 0.19
COL4A1-204ENST00000543140 FASTKQ14296 549 aaKnown RBP16.22■□□□□ 0.19
COL4A1-204ENST00000543140 LRRC36Q1X8D7 754 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 UGT3A2Q3SY77 523 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 FAM151BQ6UXP7 276 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 BNC2Q6ZN30 1099 aaPredicted RBP16.22■□□□□ 0.19
COL4A1-204ENST00000543140 RNF111Q6ZNA4 994 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 FUBP1Q96AE4 644 aaKnown RBP16.22■□□□□ 0.19
COL4A1-204ENST00000543140 ESAMQ96AP7 390 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 C19orf60Q96EN9 201 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 IL17CQ9P0M4 197 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 DNMT3BQ9UBC3 853 aaKnown RBP16.22■□□□□ 0.19
COL4A1-204ENST00000543140 TRMT6Q9UJA5 497 aaKnown RBP16.22■□□□□ 0.19
COL4A1-204ENST00000543140 E5RI56 91 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 PSMD12O00232 456 aaPredicted RBP16.22■□□□□ 0.19
COL4A1-204ENST00000543140 BNIP3LO60238 219 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 PGLSO95336 258 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 XIAPP98170 497 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 SEMG2Q02383 582 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 LMAN2Q12907 356 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 HERC3Q15034 1050 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 RETSATQ6NUM9 610 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 CPNE9Q8IYJ1 553 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 CLYBLQ8N0X4 340 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 OR9I1Q8NGQ6 314 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 PIH1D2Q8WWB5 315 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 MYCBPQ99417 103 aaPredicted RBP16.22■□□□□ 0.19
COL4A1-204ENST00000543140 CORO1BQ9BR76 489 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.22■□□□□ 0.19
COL4A1-204ENST00000543140 VPS9D1Q9Y2B5 631 aa16.22■□□□□ 0.19
COL4A1-204ENST00000543140 GOLGA8CPA6NN73 597 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 ZBBXA8MT70 800 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 C8AP07357 584 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 INHBCP55103 352 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 NME5P56597 212 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 TMC8Q8IU68 726 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 DDIASQ8IXT1 998 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 PCDH20Q8N6Y1 951 aaKnown RBP16.21■□□□□ 0.19
COL4A1-204ENST00000543140 CD200R1Q8TD46 325 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 SLC22A17Q8WUG5 538 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 LINGO1Q96FE5 620 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 ZBP1Q9H171 429 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 YY1AP1Q9H869 796 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 UTP6Q9NYH9 597 aaKnown RBP16.21■□□□□ 0.19
COL4A1-204ENST00000543140 HACD3Q9P035 362 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 SLC30A1Q9Y6M5 507 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 PTPRSQ13332 1948 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 PFDN6O15212 129 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 CXCL14O95715 111 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 TSPAN12O95859 305 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 ACADSP16219 412 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 XRCC1P18887 633 aaPredicted RBP16.21■□□□□ 0.19
COL4A1-204ENST00000543140 TCN1P20061 433 aaPredicted RBP16.21■□□□□ 0.19
COL4A1-204ENST00000543140 PPM1AP35813 382 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 HMGCLP35914 325 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 ATP6V0D1P61421 351 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 ECT2LQ008S8 904 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 CLCQ05315 142 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 CEACAM7Q14002 265 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 AAGABQ6PD74 315 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 LARP4Q71RC2 724 aaKnown RBP eCLIP16.21■□□□□ 0.19
COL4A1-204ENST00000543140 FAM217AQ8IXS0 508 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 PGAM4Q8N0Y7 254 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 SERPINI1Q99574 410 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 LRRC3Q9BY71 257 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 MRPL1Q9BYD6 325 aaKnown RBP16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms