RNA–Protein interactions for RNA: ENST00000540891.1

CD9-209, Transcript of CD9 molecule, humanhuman

TSL 3

Gene CD9, Length 642 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-209ENST00000540891 GPR34Q9UPC5 381 aa16.76■□□□□ 0.27
CD9-209ENST00000540891 CPED1A4D0V7 1026 aa16.75■□□□□ 0.27
CD9-209ENST00000540891 CASC3O15234 703 aaKnown RBP16.75■□□□□ 0.27
CD9-209ENST00000540891 NOBOXO60393 691 aa16.75■□□□□ 0.27
CD9-209ENST00000540891 FGGP02679 453 aa16.75■□□□□ 0.27
CD9-209ENST00000540891 STIP1P31948 543 aaKnown RBP16.75■□□□□ 0.27
CD9-209ENST00000540891 ADCY8P40145 1251 aa16.75■□□□□ 0.27
CD9-209ENST00000540891 CTBSQ01459 385 aa16.75■□□□□ 0.27
CD9-209ENST00000540891 SNX1Q13596 522 aa16.75■□□□□ 0.27
CD9-209ENST00000540891 PTPRCAPQ14761 206 aa16.75■□□□□ 0.27
CD9-209ENST00000540891 P3H1Q32P28 736 aa16.75■□□□□ 0.27
CD9-209ENST00000540891 ZNF648Q5T619 568 aaPredicted RBP16.75■□□□□ 0.27
CD9-209ENST00000540891 EFL1Q7Z2Z2 1120 aaKnown RBP16.75■□□□□ 0.27
CD9-209ENST00000540891 PRUNE1Q86TP1 453 aa16.75■□□□□ 0.27
CD9-209ENST00000540891 FAM46DQ8NEK8 389 aa16.75■□□□□ 0.27
CD9-209ENST00000540891 GPR156Q8NFN8 814 aa16.75■□□□□ 0.27
CD9-209ENST00000540891 SCG3Q8WXD2 468 aaKnown RBP16.75■□□□□ 0.27
CD9-209ENST00000540891 OR2M4Q96R27 311 aa16.75■□□□□ 0.27
CD9-209ENST00000540891 TBL1YQ9BQ87 522 aa16.75■□□□□ 0.27
CD9-209ENST00000540891 ARNT2Q9HBZ2 717 aa16.75■□□□□ 0.27
CD9-209ENST00000540891 ARFGAP3Q9NP61 516 aa16.75■□□□□ 0.27
CD9-209ENST00000540891 IL26Q9NPH9 171 aa16.75■□□□□ 0.27
CD9-209ENST00000540891 SPATS2LQ9NUQ6 558 aaKnown RBP16.75■□□□□ 0.27
CD9-209ENST00000540891 GULP1Q9UBP9 304 aa16.75■□□□□ 0.27
CD9-209ENST00000540891 PADI4Q9UM07 663 aa16.75■□□□□ 0.27
CD9-209ENST00000540891 ARL5AQ9Y689 179 aa16.75■□□□□ 0.27
CD9-209ENST00000540891 GAPDHSO14556 408 aaPredicted RBP16.74■□□□□ 0.27
CD9-209ENST00000540891 OPA1O60313 960 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 ASMTLO95671 621 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 ETS1P14921 441 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 CA5AP35218 305 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 E2F1Q01094 437 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 ILF3Q12906 894 aaKnown RBP eCLIP16.74■□□□□ 0.27
CD9-209ENST00000540891 CAMK2BQ13554 666 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 CCNG2Q16589 344 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 ZNF569Q5MCW4 686 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 CDCP2Q5VXM1 449 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 PDPK2PQ6A1A2 396 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 UNQ6494/PRO21346Q6UXR6 183 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 TAB3Q8N5C8 712 aaPredicted RBP16.74■□□□□ 0.27
CD9-209ENST00000540891 GLIS1Q8NBF1 620 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 DTX3LQ8TDB6 740 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 GLMNQ92990 594 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 GLYATL1Q969I3 302 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 GSDMCQ9BYG8 508 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 EVA1BQ9NVM1 165 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 TAAR2Q9P1P5 351 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 ATXN10Q9UBB4 475 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 RABGEF1Q9UJ41 708 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 ZNF148Q9UQR1 794 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 PRKAB1Q9Y478 270 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 JRKLQ9Y4A0 524 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 GPSM3Q9Y4H4 160 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 KCTD3Q9Y597 815 aa16.74■□□□□ 0.27
CD9-209ENST00000540891 GOLGA4Q13439 2230 aaKnown RBP16.73■□□□□ 0.27
CD9-209ENST00000540891 GPR39O43194 453 aa16.73■□□□□ 0.27
CD9-209ENST00000540891 ZSCAN12O43309 604 aa16.73■□□□□ 0.27
CD9-209ENST00000540891 CEP104O60308 925 aa16.73■□□□□ 0.27
CD9-209ENST00000540891 ZNF8P17098 575 aaPredicted RBP16.73■□□□□ 0.27
CD9-209ENST00000540891 SPAM1P38567 509 aa16.73■□□□□ 0.27
CD9-209ENST00000540891 RPIAP49247 311 aa16.73■□□□□ 0.27
CD9-209ENST00000540891 TAF1AQ15573 450 aaPredicted RBP16.73■□□□□ 0.27
CD9-209ENST00000540891 ATP13A5Q4VNC0 1218 aa16.73■□□□□ 0.27
CD9-209ENST00000540891 KHDC1Q4VXA5 237 aaKnown RBP16.73■□□□□ 0.27
CD9-209ENST00000540891 DRICH1Q6PGQ1 229 aaPredicted RBP16.73■□□□□ 0.27
CD9-209ENST00000540891 SLC30A9Q6PML9 568 aa16.73■□□□□ 0.27
CD9-209ENST00000540891 ADGRG6Q86SQ4 1221 aa16.73■□□□□ 0.27
CD9-209ENST00000540891 C17orf82Q86X59 251 aaPredicted RBP16.73■□□□□ 0.27
CD9-209ENST00000540891 GALNT13Q8IUC8 556 aa16.73■□□□□ 0.27
CD9-209ENST00000540891 SLC35F6Q8N357 371 aa16.73■□□□□ 0.27
CD9-209ENST00000540891 PDCD7Q8N8D1 485 aaKnown RBP16.73■□□□□ 0.27
CD9-209ENST00000540891 ANP32BQ92688 251 aaKnown RBP16.73■□□□□ 0.27
CD9-209ENST00000540891 VPS35Q96QK1 796 aa16.73■□□□□ 0.27
CD9-209ENST00000540891 DPEP2Q9H4A9 486 aa16.73■□□□□ 0.27
CD9-209ENST00000540891 TRIM39Q9HCM9 518 aa16.73■□□□□ 0.27
CD9-209ENST00000540891 TRMT1Q9NXH9 659 aaKnown RBP16.73■□□□□ 0.27
CD9-209ENST00000540891 COL27A1Q8IZC6 1860 aaPredicted RBP16.73■□□□□ 0.27
CD9-209ENST00000540891 USP27XA6NNY8 438 aa16.72■□□□□ 0.27
CD9-209ENST00000540891 B4DGG1 531 aa16.72■□□□□ 0.27
CD9-209ENST00000540891 NUAK1O60285 661 aa16.72■□□□□ 0.27
CD9-209ENST00000540891 MTX2O75431 263 aa16.72■□□□□ 0.27
CD9-209ENST00000540891 SLC25A14O95258 325 aaPredicted RBP16.72■□□□□ 0.27
CD9-209ENST00000540891 AP2A1O95782 977 aa16.72■□□□□ 0.27
CD9-209ENST00000540891 IFNB1P01574 187 aa16.72■□□□□ 0.27
CD9-209ENST00000540891 ZSCAN5DPP0CG00 497 aa16.72■□□□□ 0.27
CD9-209ENST00000540891 TARDBPQ13148 414 aaKnown RBP eCLIP16.72■□□□□ 0.27
CD9-209ENST00000540891 HLTFQ14527 1009 aaKnown RBP eCLIP16.72■□□□□ 0.27
CD9-209ENST00000540891 CHRNA6Q15825 494 aa16.72■□□□□ 0.27
CD9-209ENST00000540891 LONRF2Q1L5Z9 754 aa16.72■□□□□ 0.27
CD9-209ENST00000540891 ZDHHC20Q5W0Z9 365 aa16.72■□□□□ 0.27
CD9-209ENST00000540891 FAM151BQ6UXP7 276 aa16.72■□□□□ 0.27
CD9-209ENST00000540891 CACTIN-AS1Q8N1I8 211 aa16.72■□□□□ 0.27
CD9-209ENST00000540891 RASGEF1CQ8N431 466 aa16.72■□□□□ 0.27
CD9-209ENST00000540891 DCBLD1Q8N8Z6 715 aa16.72■□□□□ 0.27
CD9-209ENST00000540891 MAPK15Q8TD08 544 aa16.72■□□□□ 0.27
CD9-209ENST00000540891 BRSK1Q8TDC3 778 aa16.72■□□□□ 0.27
CD9-209ENST00000540891 NAT6Q93015 286 aa16.72■□□□□ 0.27
CD9-209ENST00000540891 CCDC3Q9BQI4 270 aa16.72■□□□□ 0.27
CD9-209ENST00000540891 OR2AG1Q9H205 316 aa16.72■□□□□ 0.27
CD9-209ENST00000540891 LRRC40Q9H9A6 602 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms