RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 NIPA2Q8N8Q9 360 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 SHDQ96IW2 340 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 OR52E6Q96RD3 313 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 CDH19Q9H159 772 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 OSBPL2Q9H1P3 480 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 POLR1BQ9H9Y6 1135 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 IL36AQ9UHA7 158 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 AP4S1Q9Y587 144 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 RFXANKO14593 260 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 MAP2K7O14733 419 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 PEX1O43933 1283 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 ALPPL2P10696 532 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 ALAS2P22557 587 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 HNRNPH1P31943 449 aaKnown RBP14.04□□□□□ -0.16
USP3-204ENST00000540797 FEN1P39748 380 aaKnown RBP14.04□□□□□ -0.16
USP3-204ENST00000540797 GDPD5Q8WTR4 605 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 LMLNQ96KR4 655 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 C3orf14Q9HBI5 128 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 SLC17A7Q9P2U7 560 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 RGSL1A5PLK6 1076 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 ZMPSTE24O75844 475 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 BPGMP07738 259 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 BLKP51451 505 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 MANFP55145 182 aaKnown RBP14.04□□□□□ -0.16
USP3-204ENST00000540797 ARSIQ5FYB1 569 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 LDLRAP1Q5SW96 308 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 TTC27Q6P3X3 843 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 FBXO46Q6PJ61 603 aaPredicted RBP14.04□□□□□ -0.16
USP3-204ENST00000540797 ADHFE1Q8IWW8 467 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 AHI1Q8N157 1196 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 ADI1Q9BV57 179 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 CEP44Q9C0F1 390 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 SUV39H2Q9H5I1 410 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 CCDC177Q9NQR7 707 aaPredicted RBP14.04□□□□□ -0.16
USP3-204ENST00000540797 NUDT4Q9NZJ9 180 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 IGSF9Q9P2J2 1179 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 FFAR2O15552 330 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 GALTP07902 379 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 CRHR1P34998 444 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 PSME3P61289 254 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 OASLQ15646 514 aaKnown RBP14.03□□□□□ -0.16
USP3-204ENST00000540797 TRIM40Q6P9F5 258 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 RNF44Q7L0R7 432 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 SETD9Q8NE22 299 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 BHLHE22Q8NFJ8 381 aaPredicted RBP14.03□□□□□ -0.16
USP3-204ENST00000540797 ZNF599Q96NL3 588 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 TCF12Q99081 682 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 POLR3BQ9NW08 1133 aaPredicted RBP14.03□□□□□ -0.16
USP3-204ENST00000540797 GGA2Q9UJY4 613 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 WNT6Q9Y6F9 365 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 HCRTO43612 131 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 SNX3O60493 162 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 PTGER3P43115 390 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 DEFA1P59665 94 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 DEFA3P59666 94 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 SEMG2Q02383 582 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 ATP13A5Q4VNC0 1218 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 CCNYL2Q5T2Q4 361 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 GDPD4Q6W3E5 623 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 RNF19BQ6ZMZ0 732 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 EPHX4Q8IUS5 362 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 MMAAQ8IVH4 418 aaKnown RBP14.03□□□□□ -0.16
USP3-204ENST00000540797 NRSN1Q8IZ57 195 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 OR4A15Q8NGL6 344 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 SLC38A3Q99624 504 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 C9orf16Q9BUW7 83 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 MIOSQ9NXC5 875 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 CORO1CQ9ULV4 474 aaPredicted RBP14.03□□□□□ -0.16
USP3-204ENST00000540797 SQORQ9Y6N5 450 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 PHRF1Q9P1Y6 1649 aaKnown RBP14.03□□□□□ -0.16
USP3-204ENST00000540797 PRR23D1E9PI22 279 aaPredicted RBP14.03□□□□□ -0.16
USP3-204ENST00000540797 TULP2O00295 520 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 CLOCKO15516 846 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 PRR23D2P0DMB1 279 aaPredicted RBP14.03□□□□□ -0.16
USP3-204ENST00000540797 TRIM32Q13049 653 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 HFE2Q6ZVN8 426 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 AADATQ8N5Z0 425 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 SRFBP1Q8NEF9 429 aaKnown RBP14.03□□□□□ -0.16
USP3-204ENST00000540797 CYB5D2Q8WUJ1 264 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 SIPA1Q96FS4 1042 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 PNPOQ9NVS9 261 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 DOT1LQ8TEK3 1739 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 SOX6P35712 828 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 STX4Q12846 297 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 ADRM1Q16186 407 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 APOLD1Q96LR9 279 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 MCMBPQ9BTE3 642 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 PNPLA8Q9NP80 782 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 PDP2Q9P2J9 529 aa14.03□□□□□ -0.16
USP3-204ENST00000540797 ESR1P03372 595 aa14.02□□□□□ -0.16
USP3-204ENST00000540797 ZNF865P0CJ78 1059 aaPredicted RBP14.02□□□□□ -0.16
USP3-204ENST00000540797 NSG1P42857 185 aa14.02□□□□□ -0.16
USP3-204ENST00000540797 LIMK2P53671 638 aa14.02□□□□□ -0.16
USP3-204ENST00000540797 SLC25A3Q00325 362 aa14.02□□□□□ -0.16
USP3-204ENST00000540797 MRPL28Q13084 256 aaKnown RBP14.02□□□□□ -0.16
USP3-204ENST00000540797 RP9Q8TA86 221 aaKnown RBP14.02□□□□□ -0.16
USP3-204ENST00000540797 BADQ92934 168 aa14.02□□□□□ -0.16
USP3-204ENST00000540797 EPB41L4BQ9H329 900 aa14.02□□□□□ -0.16
USP3-204ENST00000540797 SPAG4Q9NPE6 437 aa14.02□□□□□ -0.16
USP3-204ENST00000540797 N6AMT1Q9Y5N5 214 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms