RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 BPTFQ12830 3046 aa15.33■□□□□ 0.04
CPSF1-211ENST00000533492 TRBV23OR9-2A0A075B6M9 112 aa15.32■□□□□ 0.04
CPSF1-211ENST00000533492 A0A0A6YYK5 440 aaPredicted RBP15.32■□□□□ 0.04
CPSF1-211ENST00000533492 ZRANB2O95218 330 aaKnown RBP eCLIP15.32■□□□□ 0.04
CPSF1-211ENST00000533492 CDKN2BP42772 138 aa15.32■□□□□ 0.04
CPSF1-211ENST00000533492 VAC14Q08AM6 782 aa15.32■□□□□ 0.04
CPSF1-211ENST00000533492 CLPPQ16740 277 aaPredicted RBP15.32■□□□□ 0.04
CPSF1-211ENST00000533492 HENMT1Q5T8I9 393 aaKnown RBP15.32■□□□□ 0.04
CPSF1-211ENST00000533492 CHST15Q7LFX5 561 aaPredicted RBP15.32■□□□□ 0.04
CPSF1-211ENST00000533492 ZNF438Q7Z4V0 828 aa15.32■□□□□ 0.04
CPSF1-211ENST00000533492 CCDC170Q8IYT3 715 aa15.32■□□□□ 0.04
CPSF1-211ENST00000533492 TFB1MQ8WVM0 346 aaKnown RBP15.32■□□□□ 0.04
CPSF1-211ENST00000533492 SLC39A7Q92504 469 aa15.32■□□□□ 0.04
CPSF1-211ENST00000533492 WDR24Q96S15 920 aa15.32■□□□□ 0.04
CPSF1-211ENST00000533492 SPATA16Q9BXB7 569 aa15.32■□□□□ 0.04
CPSF1-211ENST00000533492 GPR63Q9BZJ6 419 aa15.32■□□□□ 0.04
CPSF1-211ENST00000533492 SEMA6CQ9H3T2 930 aa15.32■□□□□ 0.04
CPSF1-211ENST00000533492 RMI1Q9H9A7 625 aa15.32■□□□□ 0.04
CPSF1-211ENST00000533492 GLOD4Q9HC38 313 aa15.32■□□□□ 0.04
CPSF1-211ENST00000533492 MAGEE1Q9HCI5 957 aa15.32■□□□□ 0.04
CPSF1-211ENST00000533492 RAD18Q9NS91 495 aa15.32■□□□□ 0.04
CPSF1-211ENST00000533492 SAE1Q9UBE0 346 aaPredicted RBP15.32■□□□□ 0.04
CPSF1-211ENST00000533492 CNOT6Q9ULM6 557 aaKnown RBP15.32■□□□□ 0.04
CPSF1-211ENST00000533492 SHOC2Q9UQ13 582 aa15.32■□□□□ 0.04
CPSF1-211ENST00000533492 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.32■□□□□ 0.04
CPSF1-211ENST00000533492 PRKAB1Q9Y478 270 aa15.32■□□□□ 0.04
CPSF1-211ENST00000533492 PCDHA13Q9Y5I0 950 aa15.32■□□□□ 0.04
CPSF1-211ENST00000533492 OAS3Q9Y6K5 1087 aaKnown RBP15.32■□□□□ 0.04
CPSF1-211ENST00000533492 FADS2P1A8MWK0 482 aa15.31■□□□□ 0.04
CPSF1-211ENST00000533492 ATXN7O15265 892 aaPredicted RBP15.31■□□□□ 0.04
CPSF1-211ENST00000533492 PPM1DO15297 605 aa15.31■□□□□ 0.04
CPSF1-211ENST00000533492 PMPCBO75439 489 aa15.31■□□□□ 0.04
CPSF1-211ENST00000533492 SLC25A14O95258 325 aaPredicted RBP15.31■□□□□ 0.04
CPSF1-211ENST00000533492 MT-CYBP00156 380 aaPredicted RBP15.31■□□□□ 0.04
CPSF1-211ENST00000533492 SLC4A1P02730 911 aa15.31■□□□□ 0.04
CPSF1-211ENST00000533492 PIRTP0C851 137 aa15.31■□□□□ 0.04
CPSF1-211ENST00000533492 ITIH1P19827 911 aa15.31■□□□□ 0.04
CPSF1-211ENST00000533492 PTPN3P26045 913 aa15.31■□□□□ 0.04
CPSF1-211ENST00000533492 CYLC1P35663 651 aaPredicted RBP15.31■□□□□ 0.04
CPSF1-211ENST00000533492 TNNT3P45378 269 aaPredicted RBP15.31■□□□□ 0.04
CPSF1-211ENST00000533492 MAPK10P53779 464 aa15.31■□□□□ 0.04
CPSF1-211ENST00000533492 HADHBP55084 474 aaKnown RBP15.31■□□□□ 0.04
CPSF1-211ENST00000533492 NR1D2Q14995 579 aa15.31■□□□□ 0.04
CPSF1-211ENST00000533492 ALS2CLQ60I27 953 aa15.31■□□□□ 0.04
CPSF1-211ENST00000533492 SPOCD1Q6ZMY3 1216 aa15.31■□□□□ 0.04
CPSF1-211ENST00000533492 CCDC81Q6ZN84 652 aa15.31■□□□□ 0.04
CPSF1-211ENST00000533492 TMPRSS9Q7Z410 1059 aa15.31■□□□□ 0.04
CPSF1-211ENST00000533492 CCDC50Q8IVM0 306 aa15.31■□□□□ 0.04
CPSF1-211ENST00000533492 SLITRK4Q8IW52 837 aa15.31■□□□□ 0.04
CPSF1-211ENST00000533492 RCOR2Q8IZ40 523 aa15.31■□□□□ 0.04
CPSF1-211ENST00000533492 LSM14AQ8ND56 463 aaKnown RBP15.31■□□□□ 0.04
CPSF1-211ENST00000533492 SPATA22Q8NHS9 363 aa15.31■□□□□ 0.04
CPSF1-211ENST00000533492 P3H4Q92791 437 aa15.31■□□□□ 0.04
CPSF1-211ENST00000533492 AHCYL2Q96HN2 611 aaKnown RBP15.31■□□□□ 0.04
CPSF1-211ENST00000533492 TEKT5Q96M29 485 aa15.31■□□□□ 0.04
CPSF1-211ENST00000533492 TRIB3Q96RU7 358 aa15.31■□□□□ 0.04
CPSF1-211ENST00000533492 SRPK1Q96SB4 655 aaKnown RBP15.31■□□□□ 0.04
CPSF1-211ENST00000533492 ZMYND15Q9H091 742 aa15.31■□□□□ 0.04
CPSF1-211ENST00000533492 KCNK4Q9NYG8 393 aa15.31■□□□□ 0.04
CPSF1-211ENST00000533492 LOC400499M0QZD8 3231 aa15.31■□□□□ 0.04
CPSF1-211ENST00000533492 TK2O00142 265 aa15.3■□□□□ 0.04
CPSF1-211ENST00000533492 NVLO15381 856 aaKnown RBP15.3■□□□□ 0.04
CPSF1-211ENST00000533492 MTSS1O43312 755 aa15.3■□□□□ 0.04
CPSF1-211ENST00000533492 ZFC3H1O60293 1989 aaKnown RBP15.3■□□□□ 0.04
CPSF1-211ENST00000533492 DNAJC6O75061 913 aa15.3■□□□□ 0.04
CPSF1-211ENST00000533492 NDST3O95803 873 aa15.3■□□□□ 0.04
CPSF1-211ENST00000533492 CD1CP29017 333 aa15.3■□□□□ 0.04
CPSF1-211ENST00000533492 RHDQ02161 417 aa15.3■□□□□ 0.04
CPSF1-211ENST00000533492 CLN3Q13286 438 aa15.3■□□□□ 0.04
CPSF1-211ENST00000533492 PRKD1Q15139 912 aaPredicted RBP15.3■□□□□ 0.04
CPSF1-211ENST00000533492 SLC14A2Q15849 920 aa15.3■□□□□ 0.04
CPSF1-211ENST00000533492 TAF1BQ53T94 588 aaPredicted RBP15.3■□□□□ 0.04
CPSF1-211ENST00000533492 TFDP3Q5H9I0 405 aa15.3■□□□□ 0.04
CPSF1-211ENST00000533492 ZNF569Q5MCW4 686 aa15.3■□□□□ 0.04
CPSF1-211ENST00000533492 TMEM164Q5U3C3 297 aa15.3■□□□□ 0.04
CPSF1-211ENST00000533492 NKAIN2Q5VXU1 208 aa15.3■□□□□ 0.04
CPSF1-211ENST00000533492 TMC3Q7Z5M5 1100 aa15.3■□□□□ 0.04
CPSF1-211ENST00000533492 ZC3H18Q86VM9 953 aaKnown RBP15.3■□□□□ 0.04
CPSF1-211ENST00000533492 SLC38A3Q99624 504 aa15.3■□□□□ 0.04
CPSF1-211ENST00000533492 NUDT22Q9BRQ3 303 aa15.3■□□□□ 0.04
CPSF1-211ENST00000533492 ZSCAN5AQ9BUG6 496 aa15.3■□□□□ 0.04
CPSF1-211ENST00000533492 CARD9Q9H257 536 aa15.3■□□□□ 0.04
CPSF1-211ENST00000533492 GOLPH3Q9H4A6 298 aa15.3■□□□□ 0.04
CPSF1-211ENST00000533492 STN1Q9H668 368 aaKnown RBP15.3■□□□□ 0.04
CPSF1-211ENST00000533492 UBP1Q9NZI7 540 aa15.3■□□□□ 0.04
CPSF1-211ENST00000533492 KCNK6Q9Y257 313 aa15.3■□□□□ 0.04
CPSF1-211ENST00000533492 ZNF711Q9Y462 761 aa15.3■□□□□ 0.04
CPSF1-211ENST00000533492 GRID2O43424 1007 aa15.29■□□□□ 0.04
CPSF1-211ENST00000533492 NUAK1O60285 661 aa15.29■□□□□ 0.04
CPSF1-211ENST00000533492 SNX2O60749 519 aa15.29■□□□□ 0.04
CPSF1-211ENST00000533492 IPO7O95373 1038 aaKnown RBP15.29■□□□□ 0.04
CPSF1-211ENST00000533492 LCA5LO95447 670 aa15.29■□□□□ 0.04
CPSF1-211ENST00000533492 ACP5P13686 325 aa15.29■□□□□ 0.04
CPSF1-211ENST00000533492 SLC2A4P14672 509 aa15.29■□□□□ 0.04
CPSF1-211ENST00000533492 PECAM1P16284 738 aaPredicted RBP15.29■□□□□ 0.04
CPSF1-211ENST00000533492 FASLGP48023 281 aa15.29■□□□□ 0.04
CPSF1-211ENST00000533492 GPLD1P80108 840 aa15.29■□□□□ 0.04
CPSF1-211ENST00000533492 C16orf72Q14CZ0 275 aa15.29■□□□□ 0.04
CPSF1-211ENST00000533492 TAZQ16635 292 aa15.29■□□□□ 0.04
CPSF1-211ENST00000533492 ZNF574Q6ZN55 896 aaPredicted RBP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms