RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	BRINP3	Q76B58	766 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	KMT5C	Q86Y97	462 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	NRROS	Q86YC3	692 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	4.58	□□□□□ -1.68
CD44-223	ENST00000526553	LMNTD1	Q8N9Z9	388 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	THAP6	Q8TBB0	222 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	RHBDF1	Q96CC6	855 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	ARHGEF26	Q96DR7	871 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	GRAMD2B	Q96HH9	432 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	CSTL1	Q9H114	145 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	SLC28A3	Q9HAS3	691 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	SEBOX	Q9HB31	216 aa	Predicted RBP	4.58	□□□□□ -1.68
CD44-223	ENST00000526553	LRRC4	Q9HBW1	653 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	TCF7L2	Q9NQB0	619 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	POU2F3	Q9UKI9	436 aa		4.58	□□□□□ -1.68
CD44-223	ENST00000526553	LAS1L	Q9Y4W2	734 aa	Known RBP	4.58	□□□□□ -1.68
CD44-223	ENST00000526553		A0A0B4J293	547 aa		4.57	□□□□□ -1.68
CD44-223	ENST00000526553	ASPDH	A6ND91	283 aa		4.57	□□□□□ -1.68
CD44-223	ENST00000526553		K7ENM7	598 aa		4.57	□□□□□ -1.68
CD44-223	ENST00000526553	TBX18	O95935	607 aa		4.57	□□□□□ -1.68
CD44-223	ENST00000526553	HSPA1A	P0DMV8	641 aa	Known RBP	4.57	□□□□□ -1.68
CD44-223	ENST00000526553	HSPA1B	P0DMV9	641 aa	Known RBP	4.57	□□□□□ -1.68
CD44-223	ENST00000526553	GNL1	P36915	607 aa	Predicted RBP	4.57	□□□□□ -1.68
CD44-223	ENST00000526553	PBX3	P40426	434 aa		4.57	□□□□□ -1.68
CD44-223	ENST00000526553	PITX1	P78337	314 aa	Predicted RBP	4.57	□□□□□ -1.68
CD44-223	ENST00000526553	ZBED6	P86452	979 aa		4.57	□□□□□ -1.68
CD44-223	ENST00000526553	GOLGA8DP	Q0D2H9	430 aa		4.57	□□□□□ -1.68
CD44-223	ENST00000526553	KCTD2	Q14681	263 aa		4.57	□□□□□ -1.68
CD44-223	ENST00000526553	SOWAHC	Q53LP3	525 aa	Predicted RBP	4.57	□□□□□ -1.68
CD44-223	ENST00000526553	SPATA1	Q5VX52	437 aa		4.57	□□□□□ -1.68
CD44-223	ENST00000526553	CCDC89	Q8N998	374 aa		4.57	□□□□□ -1.68
CD44-223	ENST00000526553	OR14L1P	Q8NHC6	308 aa		4.57	□□□□□ -1.68
CD44-223	ENST00000526553	BBS10	Q8TAM1	723 aa		4.57	□□□□□ -1.68
CD44-223	ENST00000526553	PERP	Q96FX8	193 aa		4.57	□□□□□ -1.68
CD44-223	ENST00000526553	QRFPR	Q96P65	431 aa		4.57	□□□□□ -1.68
CD44-223	ENST00000526553	NODAL	Q96S42	347 aa		4.57	□□□□□ -1.68
CD44-223	ENST00000526553	TREX2	Q9BQ50	279 aa	Predicted RBP	4.57	□□□□□ -1.68
CD44-223	ENST00000526553	BLOC1S4	Q9NUP1	217 aa		4.57	□□□□□ -1.68
CD44-223	ENST00000526553	ABCF3	Q9NUQ8	709 aa		4.57	□□□□□ -1.68
CD44-223	ENST00000526553	LIMA1	Q9UHB6	759 aa	Known RBP	4.57	□□□□□ -1.68
CD44-223	ENST00000526553	RABGAP1	Q9Y3P9	1069 aa		4.57	□□□□□ -1.68
CD44-223	ENST00000526553	PTPRC	P08575	1304 aa		4.56	□□□□□ -1.68
CD44-223	ENST00000526553	ANKRD18B	A2A2Z9	1011 aa		4.56	□□□□□ -1.68
CD44-223	ENST00000526553	TIMM44	O43615	452 aa		4.56	□□□□□ -1.68
CD44-223	ENST00000526553	XPNPEP2	O43895	674 aa		4.56	□□□□□ -1.68
CD44-223	ENST00000526553	SLC25A12	O75746	678 aa		4.56	□□□□□ -1.68
CD44-223	ENST00000526553	MYOD1	P15172	320 aa		4.56	□□□□□ -1.68
CD44-223	ENST00000526553	ITGA2	P17301	1181 aa		4.56	□□□□□ -1.68
CD44-223	ENST00000526553	UBA7	P41226	1012 aa		4.56	□□□□□ -1.68
CD44-223	ENST00000526553	RPS3A	P61247	264 aa	Known RBP	4.56	□□□□□ -1.68
CD44-223	ENST00000526553	CEBPZ	Q03701	1054 aa	Known RBP	4.56	□□□□□ -1.68
CD44-223	ENST00000526553	MAD2L1	Q13257	205 aa	Predicted RBP	4.56	□□□□□ -1.68
CD44-223	ENST00000526553	ZNF234	Q14588	700 aa		4.56	□□□□□ -1.68
CD44-223	ENST00000526553	ADIPOQ	Q15848	244 aa		4.56	□□□□□ -1.68
CD44-223	ENST00000526553	GPATCH4	Q5T3I0	446 aa	Known RBP	4.56	□□□□□ -1.68
CD44-223	ENST00000526553	IRAK1BP1	Q5VVH5	260 aa		4.56	□□□□□ -1.68
CD44-223	ENST00000526553	CYP20A1	Q6UW02	462 aa		4.56	□□□□□ -1.68
CD44-223	ENST00000526553	GDPD4	Q6W3E5	623 aa		4.56	□□□□□ -1.68
CD44-223	ENST00000526553	TMTC3	Q6ZXV5	915 aa		4.56	□□□□□ -1.68
CD44-223	ENST00000526553	SRBD1	Q8N5C6	995 aa	Known RBP	4.56	□□□□□ -1.68
CD44-223	ENST00000526553	KBTBD3	Q8NAB2	608 aa		4.56	□□□□□ -1.68
CD44-223	ENST00000526553	TDRD7	Q8NHU6	1098 aa	Known RBP	4.56	□□□□□ -1.68
CD44-223	ENST00000526553	SGCD	Q92629	289 aa		4.56	□□□□□ -1.68
CD44-223	ENST00000526553	APBB2	Q92870	758 aa		4.56	□□□□□ -1.68
CD44-223	ENST00000526553	PIGT	Q969N2	578 aa		4.56	□□□□□ -1.68
CD44-223	ENST00000526553	SYT17	Q9BSW7	474 aa		4.56	□□□□□ -1.68
CD44-223	ENST00000526553	FKRP	Q9H9S5	495 aa		4.56	□□□□□ -1.68
CD44-223	ENST00000526553	UBA2	Q9UBT2	640 aa	Predicted RBP	4.56	□□□□□ -1.68
CD44-223	ENST00000526553	CNOT8	Q9UFF9	292 aa	Known RBP	4.56	□□□□□ -1.68
CD44-223	ENST00000526553	RALY	Q9UKM9	306 aa	Known RBP	4.56	□□□□□ -1.68
CD44-223	ENST00000526553	PADI3	Q9ULW8	664 aa		4.56	□□□□□ -1.68
CD44-223	ENST00000526553	DLGAP4	Q9Y2H0	992 aa		4.56	□□□□□ -1.68
CD44-223	ENST00000526553	KCNE2	Q9Y6J6	123 aa		4.56	□□□□□ -1.68
CD44-223	ENST00000526553	FAM172BP	A6NC97	362 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	C16orf97	H3BN30	126 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553		M0QZ24	198 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	ZBED4	O75132	1171 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	JRK	O75564	520 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	MLYCD	O95822	493 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	CETP	P11597	493 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	CDH2	P19022	906 aa	Predicted RBP	4.55	□□□□□ -1.68
CD44-223	ENST00000526553	KCNA5	P22460	613 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	CHM	P24386	653 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	APOBEC1	P41238	236 aa	Known RBP	4.55	□□□□□ -1.68
CD44-223	ENST00000526553	EEF1A1	P68104	462 aa	Known RBP	4.55	□□□□□ -1.68
CD44-223	ENST00000526553	NIPAL4	Q0D2K0	466 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	MYLK3	Q32MK0	819 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	ZNF628	Q5EBL2	1059 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	EEF1A1P5	Q5VTE0	462 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	SEPT14	Q6ZU15	432 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	ASB18	Q6ZVZ8	466 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	CPLX4	Q7Z7G2	160 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	DCUN1D3	Q8IWE4	304 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	ARHGAP12	Q8IWW6	846 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	FRMD1	Q8N878	549 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	IL17RC	Q8NAC3	791 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	UCMA	Q8WVF2	138 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	UHRF2	Q96PU4	802 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	PCYT2	Q99447	389 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	SEPT5	Q99719	369 aa	Predicted RBP	4.55	□□□□□ -1.68

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