RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 LZTR1Q8N653 840 aa14.15□□□□□ -0.14
CPSF1-201ENST00000526271 FAM71BQ8TC56 605 aa14.15□□□□□ -0.14
CPSF1-201ENST00000526271 TSPY26PQ9H489 355 aa14.15□□□□□ -0.14
CPSF1-201ENST00000526271 ZWILCHQ9H900 591 aa14.15□□□□□ -0.14
CPSF1-201ENST00000526271 NT5MQ9NPB1 228 aa14.15□□□□□ -0.14
CPSF1-201ENST00000526271 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.15□□□□□ -0.14
CPSF1-201ENST00000526271 AKAP7Q9P0M2 348 aaPredicted RBP14.15□□□□□ -0.14
CPSF1-201ENST00000526271 KCNK6Q9Y257 313 aa14.15□□□□□ -0.14
CPSF1-201ENST00000526271 HIVEP3Q5T1R4 2406 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 PRR19A6NJB7 356 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 ZNF891A8MT65 544 aaPredicted RBP14.14□□□□□ -0.15
CPSF1-201ENST00000526271 SMTNL1A8MU46 457 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 STK17BO94768 372 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 PDGFAP04085 211 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 GZMAP12544 262 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 SKILP12757 684 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 PCK1P35558 622 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 HSPA9P38646 679 aaKnown RBP14.14□□□□□ -0.15
CPSF1-201ENST00000526271 PRKCIP41743 596 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 CCR10P46092 362 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 DCAF12Q5T6F0 453 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 WDR74Q6RFH5 385 aaPredicted RBP14.14□□□□□ -0.15
CPSF1-201ENST00000526271 TMCO3Q6UWJ1 677 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 ZNF765Q7L2R6 523 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 TMEM135Q86UB9 458 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 NRSN1Q8IZ57 195 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 NLGN4XQ8N0W4 816 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 PAF1Q8N7H5 531 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 NLGN4YQ8NFZ3 816 aaPredicted RBP14.14□□□□□ -0.15
CPSF1-201ENST00000526271 MAML1Q92585 1016 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 HSPH1Q92598 858 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 ZNF653Q96CK0 615 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 PSMG3-AS1Q96PY0 264 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 TDRD1Q9BXT4 1180 aaKnown RBP14.14□□□□□ -0.15
CPSF1-201ENST00000526271 ASPSCR1Q9BZE9 553 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 CBX8Q9HC52 389 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 ARFGAP3Q9NP61 516 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 SARS2Q9NP81 518 aaKnown RBP14.14□□□□□ -0.15
CPSF1-201ENST00000526271 FBXO8Q9NRD0 319 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 CHKBQ9Y259 395 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 MAN2B2Q9Y2E5 1009 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 SLC30A1Q9Y6M5 507 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 CENPEQ02224 2701 aa14.14□□□□□ -0.15
CPSF1-201ENST00000526271 PCSK5Q92824 1860 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 A0A1W2PQ67 120 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 H3BRJ5 948 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 RNF8O76064 485 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 MMP2P08253 660 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 SPTBP11277 2137 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 UBE2IP63279 158 aaKnown RBP14.13□□□□□ -0.15
CPSF1-201ENST00000526271 HHEXQ03014 270 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 DEFB109BQ30KR1 87 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 ATP13A4Q4VNC1 1196 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 RALGPS1Q5JS13 557 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 HENMT1Q5T8I9 393 aaKnown RBP14.13□□□□□ -0.15
CPSF1-201ENST00000526271 MARC1Q5VT66 337 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 HGSNATQ68CP4 663 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 NCBP2-AS2Q69YL0 99 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 USP45Q70EL2 814 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 GALNT13Q8IUC8 556 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 ATPAF2Q8N5M1 289 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.13□□□□□ -0.15
CPSF1-201ENST00000526271 STARD8Q92502 1023 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 MIB2Q96AX9 1013 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 SLC38A3Q99624 504 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 BRD8Q9H0E9 1235 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 ISCUQ9H1K1 167 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 GPN2Q9H9Y4 310 aaPredicted RBP14.13□□□□□ -0.15
CPSF1-201ENST00000526271 RTN4Q9NQC3 1192 aaKnown RBP14.13□□□□□ -0.15
CPSF1-201ENST00000526271 KCTD5Q9NXV2 234 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 AIPL1Q9NZN9 384 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 MYO1AQ9UBC5 1043 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 SLC23A2Q9UGH3 650 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 KLHL3Q9UH77 587 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 MYO6Q9UM54 1294 aa14.13□□□□□ -0.15
CPSF1-201ENST00000526271 MN1Q10571 1320 aaPredicted RBP14.13□□□□□ -0.15
CPSF1-201ENST00000526271 MTSS1O43312 755 aa14.12□□□□□ -0.15
CPSF1-201ENST00000526271 HLA-DQB2P05538 268 aa14.12□□□□□ -0.15
CPSF1-201ENST00000526271 RNF224P0DH78 156 aa14.12□□□□□ -0.15
CPSF1-201ENST00000526271 ACP5P13686 325 aa14.12□□□□□ -0.15
CPSF1-201ENST00000526271 STAT5AP42229 794 aa14.12□□□□□ -0.15
CPSF1-201ENST00000526271 ZNF135P52742 658 aaPredicted RBP14.12□□□□□ -0.15
CPSF1-201ENST00000526271 RAB15P59190 212 aa14.12□□□□□ -0.15
CPSF1-201ENST00000526271 SH3BP2P78314 561 aa14.12□□□□□ -0.15
CPSF1-201ENST00000526271 ABHD18Q0P651 414 aa14.12□□□□□ -0.15
CPSF1-201ENST00000526271 GALNT2Q10471 571 aa14.12□□□□□ -0.15
CPSF1-201ENST00000526271 SLC10A2Q12908 348 aaPredicted RBP14.12□□□□□ -0.15
CPSF1-201ENST00000526271 CHST15Q7LFX5 561 aaPredicted RBP14.12□□□□□ -0.15
CPSF1-201ENST00000526271 AOPEPQ8N6M6 819 aa14.12□□□□□ -0.15
CPSF1-201ENST00000526271 C9orf43Q8TAL5 461 aaPredicted RBP14.12□□□□□ -0.15
CPSF1-201ENST00000526271 NCSTNQ92542 709 aa14.12□□□□□ -0.15
CPSF1-201ENST00000526271 PLEKHG4BQ96PX9 1271 aa14.12□□□□□ -0.15
CPSF1-201ENST00000526271 LYSMD1Q96S90 227 aa14.12□□□□□ -0.15
CPSF1-201ENST00000526271 DPYSL5Q9BPU6 564 aa14.12□□□□□ -0.15
CPSF1-201ENST00000526271 PRDM8Q9NQV8 689 aa14.12□□□□□ -0.15
CPSF1-201ENST00000526271 ANAPC2Q9UJX6 822 aa14.12□□□□□ -0.15
CPSF1-201ENST00000526271 TMPRSS11EQ9UL52 423 aa14.12□□□□□ -0.15
CPSF1-201ENST00000526271 TP53TG5Q9Y2B4 290 aa14.12□□□□□ -0.15
CPSF1-201ENST00000526271 KCNMB2Q9Y691 235 aa14.12□□□□□ -0.15
CPSF1-201ENST00000526271 MYO9AB2RTY4 2548 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms