RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 NAGSQ8N159 534 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 LSM14AQ8ND56 463 aaKnown RBP13.56□□□□□ -0.24
TCOF1-215ENST00000515516 SLC39A7Q92504 469 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 P3H4Q92791 437 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 AHCYL2Q96HN2 611 aaKnown RBP13.56□□□□□ -0.24
TCOF1-215ENST00000515516 BBC3Q96PG8 261 aaPredicted RBP13.56□□□□□ -0.24
TCOF1-215ENST00000515516 SLC38A3Q99624 504 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 DPYSL5Q9BPU6 564 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 RDH14Q9HBH5 336 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 GLOD4Q9HC38 313 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 MAGEE1Q9HCI5 957 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 KCNK4Q9NYG8 393 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 PCDHA13Q9Y5I0 950 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 ALG6Q9Y672 507 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 TRBV23OR9-2A0A075B6M9 112 aa13.55□□□□□ -0.24
TCOF1-215ENST00000515516 NVLO15381 856 aaKnown RBP13.55□□□□□ -0.24
TCOF1-215ENST00000515516 SLC25A14O95258 325 aaPredicted RBP13.55□□□□□ -0.24
TCOF1-215ENST00000515516 IPO7O95373 1038 aaKnown RBP13.55□□□□□ -0.24
TCOF1-215ENST00000515516 NDST3O95803 873 aa13.55□□□□□ -0.24
TCOF1-215ENST00000515516 SLC2A4P14672 509 aa13.55□□□□□ -0.24
TCOF1-215ENST00000515516 CDKN2BP42772 138 aa13.55□□□□□ -0.24
TCOF1-215ENST00000515516 MAPK10P53779 464 aa13.55□□□□□ -0.24
TCOF1-215ENST00000515516 HADHBP55084 474 aaKnown RBP13.55□□□□□ -0.24
TCOF1-215ENST00000515516 RHDQ02161 417 aa13.55□□□□□ -0.24
TCOF1-215ENST00000515516 NR1D2Q14995 579 aa13.55□□□□□ -0.24
TCOF1-215ENST00000515516 SLC14A2Q15849 920 aa13.55□□□□□ -0.24
TCOF1-215ENST00000515516 TFDP3Q5H9I0 405 aa13.55□□□□□ -0.24
TCOF1-215ENST00000515516 ZNF569Q5MCW4 686 aa13.55□□□□□ -0.24
TCOF1-215ENST00000515516 ALS2CLQ60I27 953 aa13.55□□□□□ -0.24
TCOF1-215ENST00000515516 SPOCD1Q6ZMY3 1216 aa13.55□□□□□ -0.24
TCOF1-215ENST00000515516 CCDC81Q6ZN84 652 aa13.55□□□□□ -0.24
TCOF1-215ENST00000515516 B4GALNT4Q76KP1 1039 aa13.55□□□□□ -0.24
TCOF1-215ENST00000515516 TC2NQ8N9U0 490 aa13.55□□□□□ -0.24
TCOF1-215ENST00000515516 PATE1Q8WXA2 126 aa13.55□□□□□ -0.24
TCOF1-215ENST00000515516 RBM41Q96IZ5 413 aaKnown RBP13.55□□□□□ -0.24
TCOF1-215ENST00000515516 ZSCAN5AQ9BUG6 496 aa13.55□□□□□ -0.24
TCOF1-215ENST00000515516 SEMA6CQ9H3T2 930 aa13.55□□□□□ -0.24
TCOF1-215ENST00000515516 CNOT6Q9ULM6 557 aaKnown RBP13.55□□□□□ -0.24
TCOF1-215ENST00000515516 SHOC2Q9UQ13 582 aa13.55□□□□□ -0.24
TCOF1-215ENST00000515516 PRKAB1Q9Y478 270 aa13.55□□□□□ -0.24
TCOF1-215ENST00000515516 PCDHB11Q9Y5F2 797 aa13.55□□□□□ -0.24
TCOF1-215ENST00000515516 MYLKQ15746 1914 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 FADS2P1A8MWK0 482 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 PPM1DO15297 605 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 GRID2O43424 1007 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 SNX2O60749 519 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 DNAJC6O75061 913 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 PMPCBO75439 489 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 PIRTP0C851 137 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 ACP5P13686 325 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 PTPN3P26045 913 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 CD1CP29017 333 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 NAP1L1P55209 391 aaKnown RBP13.54□□□□□ -0.24
TCOF1-215ENST00000515516 GPLD1P80108 840 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 C19orf57Q0VDD7 668 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 CLN3Q13286 438 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 TRA2AQ13595 282 aaKnown RBP eCLIP13.54□□□□□ -0.241e-7■■■■■ 31.7
TCOF1-215ENST00000515516 PRKD1Q15139 912 aaPredicted RBP13.54□□□□□ -0.24
TCOF1-215ENST00000515516 LLGL1Q15334 1064 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 CCDC181Q5TID7 509 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 NKAIN2Q5VXU1 208 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 TMC3Q7Z5M5 1100 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 PHYKPLQ8IUZ5 450 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 SLITRK4Q8IW52 837 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 KATNAL2Q8IYT4 538 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 CCDC112Q8NEF3 446 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 OR10G6Q8NH81 332 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 SPATA22Q8NHS9 363 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 SH3KBP1Q96B97 665 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 CALR3Q96L12 384 aaKnown RBP13.54□□□□□ -0.24
TCOF1-215ENST00000515516 TEKT5Q96M29 485 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 TRIB3Q96RU7 358 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 WDR24Q96S15 920 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 CCNL2Q96S94 520 aaPredicted RBP13.54□□□□□ -0.24
TCOF1-215ENST00000515516 FERMT1Q9BQL6 677 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 CARD9Q9H257 536 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 UBP1Q9NZI7 540 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 KLHL8Q9P2G9 620 aaPredicted RBP13.54□□□□□ -0.24
TCOF1-215ENST00000515516 SAE1Q9UBE0 346 aaPredicted RBP13.54□□□□□ -0.24
TCOF1-215ENST00000515516 FAM153AQ9UHL3 310 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 ZNF711Q9Y462 761 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 ST14Q9Y5Y6 855 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 OAS3Q9Y6K5 1087 aaKnown RBP13.54□□□□□ -0.24
TCOF1-215ENST00000515516 ITPR1Q14643 2758 aa13.54□□□□□ -0.24
TCOF1-215ENST00000515516 IGHV1OR21-1A0A087WYE8 117 aa13.53□□□□□ -0.24
TCOF1-215ENST00000515516 ERVH48-1M5A8F1 160 aa13.53□□□□□ -0.24
TCOF1-215ENST00000515516 HGSO14964 777 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-215ENST00000515516 LCA5LO95447 670 aa13.53□□□□□ -0.24
TCOF1-215ENST00000515516 MT-CYBP00156 380 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-215ENST00000515516 ITIH1P19827 911 aa13.53□□□□□ -0.24
TCOF1-215ENST00000515516 CSTF2P33240 577 aaKnown RBP eCLIP13.53□□□□□ -0.24
TCOF1-215ENST00000515516 FASLGP48023 281 aa13.53□□□□□ -0.24
TCOF1-215ENST00000515516 DCDC1P59894 354 aa13.53□□□□□ -0.24
TCOF1-215ENST00000515516 HHEXQ03014 270 aa13.53□□□□□ -0.24
TCOF1-215ENST00000515516 TAZQ16635 292 aa13.53□□□□□ -0.24
TCOF1-215ENST00000515516 PDPK2PQ6A1A2 396 aa13.53□□□□□ -0.24
TCOF1-215ENST00000515516 PID1Q7Z2X4 250 aa13.53□□□□□ -0.24
TCOF1-215ENST00000515516 TMPRSS9Q7Z410 1059 aa13.53□□□□□ -0.24
TCOF1-215ENST00000515516 DAAM2Q86T65 1068 aa13.53□□□□□ -0.24
TCOF1-215ENST00000515516 SLC9B2Q86UD5 537 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms