RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 DSEQ9UL01 958 aa17.03■□□□□ 0.32
SQSTM1-211ENST00000506690 PCDHB3Q9Y5E6 796 aa17.03■□□□□ 0.32
SQSTM1-211ENST00000506690 MAGED1Q9Y5V3 778 aaPredicted RBP17.03■□□□□ 0.32
SQSTM1-211ENST00000506690 V9GYQ6 96 aa17.03■□□□□ 0.32
SQSTM1-211ENST00000506690 SLC22A1O15245 554 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 NDUFS2O75306 463 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 DEAF1O75398 565 aaPredicted RBP17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 CDK14O94921 469 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 MT-CYBP00156 380 aaPredicted RBP17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 NTRK1P04629 796 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 CDH1P12830 882 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 LBPP18428 481 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 PAMP19021 973 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 SOX11P35716 441 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 CDH13P55290 713 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 IFITM2Q01629 132 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 ILF2Q12905 390 aaKnown RBP17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 FSCN1Q16658 493 aaKnown RBP17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 MEP1AQ16819 746 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 CTU2Q2VPK5 515 aaKnown RBP17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 LAIR2Q6ISS4 152 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 UGT3A1Q6NUS8 523 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 CLEC4FQ8N1N0 589 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 OR7A2PQ8NGA2 310 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 UPF1Q92900 1129 aaKnown RBP eCLIP17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 PCDH12Q9NPG4 1184 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 USP22Q9UPT9 525 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 GPR45Q9Y5Y3 372 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 PMF1-BGLAPU3KQ54 211 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 LTBP3Q9NS15 1303 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 SOWAHBA6NEL2 793 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 A8MU76 341 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 KPNA6O60684 536 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 WISP3O95389 354 aaPredicted RBP17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 C22orf31O95567 290 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 FOXA1P55317 472 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 RCAN2Q14206 197 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 PAGE2BQ5JRK9 111 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 PAGE3Q5JUK9 113 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 ISCA2Q86U28 154 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 STK32CQ86UX6 486 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 LRRC52Q8N7C0 313 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 TXNDC15Q96J42 360 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 ZMAT2Q96NC0 199 aaKnown RBP17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 TMEM74Q96NL1 305 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 TSGA13Q96PP4 275 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 PPP1R16BQ96T49 567 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 IL12RB2Q99665 862 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 TUBB1Q9H4B7 451 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 ALG9Q9H6U8 611 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 CPNE5Q9HCH3 593 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 GDAP2Q9NXN4 497 aa17.02■□□□□ 0.32
SQSTM1-211ENST00000506690 TYW5A2RUC4 315 aaKnown RBP17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 H3BMM5 538 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 PPP6CO00743 305 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 EEDO75530 441 aaKnown RBP17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 HGFP14210 728 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 ZFP36L2P47974 494 aaKnown RBP17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 CLCN5P51795 746 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 CLCQ05315 142 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 RPS6KA2Q15349 733 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 HIST2H2ACQ16777 129 aaPredicted RBP17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 DGUOKQ16854 277 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 ADPRMQ3LIE5 342 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 FUT11Q495W5 492 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 ATAD3BQ5T9A4 648 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 KANK2Q63ZY3 851 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 IPMKQ8NFU5 416 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 VPS33AQ96AX1 596 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 TSPAN17Q96FV3 270 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 ASB2Q96Q27 587 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 FEM1AQ9BSK4 669 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 HOXD1Q9GZZ0 328 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 AS3MTQ9HBK9 375 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 NECTIN3Q9NQS3 549 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 POLG2Q9UHN1 485 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 SNX5Q9Y5X3 404 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 ZNF99A8MXY4 864 aaPredicted RBP17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 AZIN1O14977 448 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 HBP1O60381 514 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 TULP3O75386 442 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 NADKO95544 446 aaPredicted RBP17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 NDUFV1P49821 464 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 NBPF12Q5TAG4 269 aaPredicted RBP17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 HFE2Q6ZVN8 426 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 ARMC8Q8IUR7 673 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 MMAAQ8IVH4 418 aaKnown RBP17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 NAT16Q8N8M0 369 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 NDNFQ8TB73 568 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 PHF10Q8WUB8 498 aaKnown RBP17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 TUBGCP3Q96CW5 907 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 NODALQ96S42 347 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 MBOAT4Q96T53 435 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 FICDQ9BVA6 458 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 BTBD2Q9BX70 525 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 AMBRA1Q9C0C7 1298 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 SP140LQ9H930 580 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 LTB4R2Q9NPC1 389 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 POLE4Q9NR33 117 aa17.01■□□□□ 0.31
SQSTM1-211ENST00000506690 FZD9O00144 591 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms