RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 SQSTM1Q13501 440 aa22.42■■□□□ 1.18
PTPN4-211ENST00000488279 C16orf72Q14CZ0 275 aa22.42■■□□□ 1.18
PTPN4-211ENST00000488279 TGIF1Q15583 401 aa22.42■■□□□ 1.18
PTPN4-211ENST00000488279 HENMT1Q5T8I9 393 aaKnown RBP22.42■■□□□ 1.18
PTPN4-211ENST00000488279 NKAIN2Q5VXU1 208 aa22.42■■□□□ 1.18
PTPN4-211ENST00000488279 NT5DC3Q86UY8 548 aa22.42■■□□□ 1.18
PTPN4-211ENST00000488279 RFX6Q8HWS3 928 aa22.42■■□□□ 1.18
PTPN4-211ENST00000488279 RHOT1Q8IXI2 618 aa22.42■■□□□ 1.18
PTPN4-211ENST00000488279 ZNF843Q8N446 348 aa22.42■■□□□ 1.18
PTPN4-211ENST00000488279 AGAP3Q96P47 875 aa22.42■■□□□ 1.18
PTPN4-211ENST00000488279 CEP41Q9BYV8 373 aa22.42■■□□□ 1.18
PTPN4-211ENST00000488279 BRD8Q9H0E9 1235 aa22.42■■□□□ 1.18
PTPN4-211ENST00000488279 RMI1Q9H9A7 625 aa22.42■■□□□ 1.18
PTPN4-211ENST00000488279 DDX56Q9NY93 547 aaKnown RBP22.42■■□□□ 1.18
PTPN4-211ENST00000488279 KCNK4Q9NYG8 393 aa22.42■■□□□ 1.18
PTPN4-211ENST00000488279 GCN1Q92616 2671 aaKnown RBP22.41■■□□□ 1.18
PTPN4-211ENST00000488279 TRBV23OR9-2A0A075B6M9 112 aa22.41■■□□□ 1.18
PTPN4-211ENST00000488279 IGHV5-10-1A0A0J9YXX1 117 aa22.41■■□□□ 1.18
PTPN4-211ENST00000488279 HGSO14964 777 aaPredicted RBP22.41■■□□□ 1.18
PTPN4-211ENST00000488279 DNAJC6O75061 913 aa22.41■■□□□ 1.18
PTPN4-211ENST00000488279 KRT1P04264 644 aa22.41■■□□□ 1.18
PTPN4-211ENST00000488279 FASLGP48023 281 aa22.41■■□□□ 1.18
PTPN4-211ENST00000488279 GALNT3Q14435 633 aa22.41■■□□□ 1.18
PTPN4-211ENST00000488279 NPNTQ6UXI9 565 aa22.41■■□□□ 1.18
PTPN4-211ENST00000488279 CHST15Q7LFX5 561 aaPredicted RBP22.41■■□□□ 1.18
PTPN4-211ENST00000488279 KDELC2Q7Z4H8 507 aa22.41■■□□□ 1.18
PTPN4-211ENST00000488279 CNGA4Q8IV77 575 aa22.41■■□□□ 1.18
PTPN4-211ENST00000488279 RNF214Q8ND24 703 aa22.41■■□□□ 1.18
PTPN4-211ENST00000488279 RCBTB1Q8NDN9 531 aa22.41■■□□□ 1.18
PTPN4-211ENST00000488279 OR4D9Q8NGE8 314 aa22.41■■□□□ 1.18
PTPN4-211ENST00000488279 TTC9Q92623 222 aa22.41■■□□□ 1.18
PTPN4-211ENST00000488279 RNF25Q96BH1 459 aaPredicted RBP22.41■■□□□ 1.18
PTPN4-211ENST00000488279 IMP4Q96G21 291 aaKnown RBP22.41■■□□□ 1.18
PTPN4-211ENST00000488279 OLFM3Q96PB7 478 aa22.41■■□□□ 1.18
PTPN4-211ENST00000488279 DPYSL5Q9BPU6 564 aa22.41■■□□□ 1.18
PTPN4-211ENST00000488279 B3GNT4Q9C0J1 378 aa22.41■■□□□ 1.18
PTPN4-211ENST00000488279 SLC25A51Q9H1U9 297 aa22.41■■□□□ 1.18
PTPN4-211ENST00000488279 ZFYVE1Q9HBF4 777 aa22.41■■□□□ 1.18
PTPN4-211ENST00000488279 INTUQ9ULD6 942 aa22.41■■□□□ 1.18
PTPN4-211ENST00000488279 PRKAB1Q9Y478 270 aa22.41■■□□□ 1.18
PTPN4-211ENST00000488279 PCDHB11Q9Y5F2 797 aa22.41■■□□□ 1.18
PTPN4-211ENST00000488279 OAS3Q9Y6K5 1087 aaKnown RBP22.41■■□□□ 1.18
PTPN4-211ENST00000488279 IGHV1OR21-1A0A087WYE8 117 aa22.4■■□□□ 1.18
PTPN4-211ENST00000488279 FADS2P1A8MWK0 482 aa22.4■■□□□ 1.18
PTPN4-211ENST00000488279 EFSO43281 561 aa22.4■■□□□ 1.18
PTPN4-211ENST00000488279 TNNT1P13805 278 aa22.4■■□□□ 1.18
PTPN4-211ENST00000488279 LIMK2P53671 638 aa22.4■■□□□ 1.18
PTPN4-211ENST00000488279 GPLD1P80108 840 aa22.4■■□□□ 1.18
PTPN4-211ENST00000488279 TRA2AQ13595 282 aaKnown RBP eCLIP22.4■■□□□ 1.18
PTPN4-211ENST00000488279 TCEAL1Q15170 157 aa22.4■■□□□ 1.18
PTPN4-211ENST00000488279 KIAA1614Q5VZ46 1190 aa22.4■■□□□ 1.18
PTPN4-211ENST00000488279 BZW1Q7L1Q6 419 aaKnown RBP22.4■■□□□ 1.18
PTPN4-211ENST00000488279 LYSMD3Q7Z3D4 306 aa22.4■■□□□ 1.18
PTPN4-211ENST00000488279 SFRP1Q8N474 314 aa22.4■■□□□ 1.18
PTPN4-211ENST00000488279 SLC37A2Q8TED4 501 aa22.4■■□□□ 1.18
PTPN4-211ENST00000488279 CCDC74BQ96LY2 380 aa22.4■■□□□ 1.18
PTPN4-211ENST00000488279 TRIB3Q96RU7 358 aa22.4■■□□□ 1.18
PTPN4-211ENST00000488279 SLC38A3Q99624 504 aa22.4■■□□□ 1.18
PTPN4-211ENST00000488279 MAGEE1Q9HCI5 957 aa22.4■■□□□ 1.18
PTPN4-211ENST00000488279 C9orf172C9J069 976 aa22.39■■□□□ 1.17
PTPN4-211ENST00000488279 AKR1B15C9JRZ8 316 aaPredicted RBP22.39■■□□□ 1.17
PTPN4-211ENST00000488279 SPOPO43791 374 aa22.39■■□□□ 1.17
PTPN4-211ENST00000488279 CCL4P13236 92 aa22.39■■□□□ 1.17
PTPN4-211ENST00000488279 COMTP21964 271 aa22.39■■□□□ 1.17
PTPN4-211ENST00000488279 CD82P27701 267 aa22.39■■□□□ 1.17
PTPN4-211ENST00000488279 NR2C2P49116 596 aa22.39■■□□□ 1.17
PTPN4-211ENST00000488279 DYNLT1P63172 113 aa22.39■■□□□ 1.17
PTPN4-211ENST00000488279 FAM182AQ5T1J6 154 aa22.39■■□□□ 1.17
PTPN4-211ENST00000488279 CCDC70Q6NSX1 233 aa22.39■■□□□ 1.17
PTPN4-211ENST00000488279 ZFAND4Q86XD8 727 aa22.39■■□□□ 1.17
PTPN4-211ENST00000488279 EID2BQ96D98 161 aa22.39■■□□□ 1.17
PTPN4-211ENST00000488279 AHCYL2Q96HN2 611 aaKnown RBP22.39■■□□□ 1.17
PTPN4-211ENST00000488279 RAD18Q9NS91 495 aa22.39■■□□□ 1.17
PTPN4-211ENST00000488279 FOXJ2Q9P0K8 574 aa22.39■■□□□ 1.17
PTPN4-211ENST00000488279 PCYT1BQ9Y5K3 369 aaPredicted RBP22.39■■□□□ 1.17
PTPN4-211ENST00000488279 CFAP46Q8IYW2 2715 aa22.39■■□□□ 1.17
PTPN4-211ENST00000488279 PPM1FP49593 454 aaPredicted RBP22.38■■□□□ 1.17
PTPN4-211ENST00000488279 CDK18Q07002 472 aa22.38■■□□□ 1.17
PTPN4-211ENST00000488279 PCSK7Q16549 785 aa22.38■■□□□ 1.17
PTPN4-211ENST00000488279 TEX44Q53QW1 395 aa22.38■■□□□ 1.17
PTPN4-211ENST00000488279 MFSD7Q6UXD7 560 aa22.38■■□□□ 1.17
PTPN4-211ENST00000488279 ZNF605Q86T29 641 aa22.38■■□□□ 1.17
PTPN4-211ENST00000488279 AGBL5Q8NDL9 886 aa22.38■■□□□ 1.17
PTPN4-211ENST00000488279 OR10G6Q8NH81 332 aa22.38■■□□□ 1.17
PTPN4-211ENST00000488279 SPATA16Q9BXB7 569 aa22.38■■□□□ 1.17
PTPN4-211ENST00000488279 CARD9Q9H257 536 aa22.38■■□□□ 1.17
PTPN4-211ENST00000488279 TBC1D29Q9UFV1 150 aa22.38■■□□□ 1.17
PTPN4-211ENST00000488279 SHOC2Q9UQ13 582 aa22.38■■□□□ 1.17
PTPN4-211ENST00000488279 HYOU1Q9Y4L1 999 aa22.38■■□□□ 1.17
PTPN4-211ENST00000488279 GRID2O43424 1007 aa22.37■■□□□ 1.17
PTPN4-211ENST00000488279 NUAK1O60285 661 aa22.37■■□□□ 1.17
PTPN4-211ENST00000488279 SLC25A14O95258 325 aaPredicted RBP22.37■■□□□ 1.17
PTPN4-211ENST00000488279 EML2O95834 649 aa22.37■■□□□ 1.17
PTPN4-211ENST00000488279 FGF3P11487 239 aaPredicted RBP22.37■■□□□ 1.17
PTPN4-211ENST00000488279 ACP5P13686 325 aa22.37■■□□□ 1.17
PTPN4-211ENST00000488279 MPSTP25325 297 aa22.37■■□□□ 1.17
PTPN4-211ENST00000488279 CSTF2P33240 577 aaKnown RBP eCLIP22.37■■□□□ 1.17
PTPN4-211ENST00000488279 TFDP2Q14188 446 aa22.37■■□□□ 1.17
PTPN4-211ENST00000488279 SLC14A2Q15849 920 aa22.37■■□□□ 1.17
PTPN4-211ENST00000488279 MANEAQ5SRI9 462 aa22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms