RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 HSP90AB2PQ58FF8 381 aa2.85□□□□□ -1.95
SMC4-220ENST00000488017 CPLX2Q6PUV4 134 aaKnown RBP2.85□□□□□ -1.95
SMC4-220ENST00000488017 MFSD6Q6ZSS7 791 aa2.85□□□□□ -1.95
SMC4-220ENST00000488017 ADSSL1Q8N142 457 aa2.85□□□□□ -1.95
SMC4-220ENST00000488017 BBS4Q96RK4 519 aa2.85□□□□□ -1.95
SMC4-220ENST00000488017 PELI2Q9HAT8 420 aa2.85□□□□□ -1.95
SMC4-220ENST00000488017 SNTG1Q9NSN8 517 aa2.85□□□□□ -1.95
SMC4-220ENST00000488017 LSM4Q9Y4Z0 139 aaKnown RBP2.85□□□□□ -1.95
SMC4-220ENST00000488017 KLLNB2CW77 178 aa2.84□□□□□ -1.95
SMC4-220ENST00000488017 SPINT2O43291 252 aa2.84□□□□□ -1.95
SMC4-220ENST00000488017 PI15O43692 258 aa2.84□□□□□ -1.95
SMC4-220ENST00000488017 CLPTM1O96005 669 aa2.84□□□□□ -1.95
SMC4-220ENST00000488017 KRT18P05783 430 aaKnown RBP2.84□□□□□ -1.95
SMC4-220ENST00000488017 HEXAP06865 529 aa2.84□□□□□ -1.95
SMC4-220ENST00000488017 EDN2P20800 178 aa2.84□□□□□ -1.95
SMC4-220ENST00000488017 CEACAM8P31997 349 aaPredicted RBP2.84□□□□□ -1.95
SMC4-220ENST00000488017 NEK3P51956 506 aa2.84□□□□□ -1.95
SMC4-220ENST00000488017 KCNJ10P78508 379 aa2.84□□□□□ -1.95
SMC4-220ENST00000488017 ACVR2BQ13705 512 aa2.84□□□□□ -1.95
SMC4-220ENST00000488017 FBXO46Q6PJ61 603 aaPredicted RBP2.84□□□□□ -1.95
SMC4-220ENST00000488017 RAD9BQ6WBX8 426 aa2.84□□□□□ -1.95
SMC4-220ENST00000488017 PIWIL4Q7Z3Z4 852 aaKnown RBP2.84□□□□□ -1.95
SMC4-220ENST00000488017 ADIPOR2Q86V24 386 aa2.84□□□□□ -1.95
SMC4-220ENST00000488017 CACNA2D3Q8IZS8 1091 aa2.84□□□□□ -1.95
SMC4-220ENST00000488017 SCML4Q8N228 414 aa2.84□□□□□ -1.95
SMC4-220ENST00000488017 TMEM57Q8N5G2 664 aa2.84□□□□□ -1.95
SMC4-220ENST00000488017 ZNF611Q8N823 705 aa2.84□□□□□ -1.95
SMC4-220ENST00000488017 ORAI1Q96D31 301 aa2.84□□□□□ -1.95
SMC4-220ENST00000488017 TCP11L1Q9NUJ3 509 aa2.84□□□□□ -1.95
SMC4-220ENST00000488017 ALKBH4Q9NXW9 302 aa2.84□□□□□ -1.95
SMC4-220ENST00000488017 CTNNAL1Q9UBT7 734 aa2.84□□□□□ -1.95
SMC4-220ENST00000488017 FAM96BQ9Y3D0 163 aa2.84□□□□□ -1.95
SMC4-220ENST00000488017 STK36Q9NRP7 1315 aa2.84□□□□□ -1.96
SMC4-220ENST00000488017 TEX22C9J3V5 150 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 TMEM178BH3BS89 294 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 CSTBP04080 98 aaKnown RBP2.83□□□□□ -1.96
SMC4-220ENST00000488017 MYL1P05976 194 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 TPOP07202 933 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 FRMD6-AS1P0C7T7 363 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 TRIM49P0CI25 452 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 TRIM49CP0CI26 452 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 MSH3P20585 1137 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 ITGA3P26006 1051 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 CDC25CP30307 473 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 ELF1P32519 619 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 TAS2R38P59533 333 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 NAA25Q14CX7 972 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 HIST2H2ACQ16777 129 aaPredicted RBP2.83□□□□□ -1.96
SMC4-220ENST00000488017 CCSAPQ6IQ19 270 aaPredicted RBP2.83□□□□□ -1.96
SMC4-220ENST00000488017 XRRA1Q6P2D8 792 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 BHLHB9Q6PI77 547 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 Q6ZR54 194 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 TADA2BQ86TJ2 420 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 GPR180Q86V85 440 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 C11orf53Q8IXP5 236 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 HUS1BQ8NHY5 278 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 ZSCAN31Q96LW9 406 aaPredicted RBP2.83□□□□□ -1.96
SMC4-220ENST00000488017 PLCXD1Q9NUJ7 323 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 IL1RAPL1Q9NZN1 696 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 DLGAP2Q9P1A6 1054 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 PEMTQ9UBM1 199 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 PADI3Q9ULW8 664 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 ERVK-11Q9UQG0 969 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 DNAJC16Q9Y2G8 782 aa2.83□□□□□ -1.96
SMC4-220ENST00000488017 H0YIN7 160 aa2.82□□□□□ -1.96
SMC4-220ENST00000488017 PRC1O43663 620 aa2.82□□□□□ -1.96
SMC4-220ENST00000488017 DUX4L4P0CJ87 422 aa2.82□□□□□ -1.96
SMC4-220ENST00000488017 ADD2P35612 726 aa2.82□□□□□ -1.96
SMC4-220ENST00000488017 ACTR2P61160 394 aa2.82□□□□□ -1.96
SMC4-220ENST00000488017 MYLK3Q32MK0 819 aa2.82□□□□□ -1.96
SMC4-220ENST00000488017 SLC25A30Q5SVS4 291 aa2.82□□□□□ -1.96
SMC4-220ENST00000488017 ZNF280DQ6N043 979 aa2.82□□□□□ -1.96
SMC4-220ENST00000488017 MAP7D3Q8IWC1 876 aa2.82□□□□□ -1.96
SMC4-220ENST00000488017 C11orf65Q8NCR3 313 aa2.82□□□□□ -1.96
SMC4-220ENST00000488017 ACVR1CQ8NER5 493 aa2.82□□□□□ -1.96
SMC4-220ENST00000488017 SPPL3Q8TCT6 385 aa2.82□□□□□ -1.96
SMC4-220ENST00000488017 RUBCNQ92622 972 aa2.82□□□□□ -1.96
SMC4-220ENST00000488017 RHBDF1Q96CC6 855 aa2.82□□□□□ -1.96
SMC4-220ENST00000488017 FAM110AQ9BQ89 295 aa2.82□□□□□ -1.96
SMC4-220ENST00000488017 MROH8Q9H579 483 aa2.82□□□□□ -1.96
SMC4-220ENST00000488017 ARNT2Q9HBZ2 717 aa2.82□□□□□ -1.96
SMC4-220ENST00000488017 SIX2Q9NPC8 291 aa2.82□□□□□ -1.96
SMC4-220ENST00000488017 RASSF1Q9NS23 344 aa2.82□□□□□ -1.96
SMC4-220ENST00000488017 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP2.82□□□□□ -1.96
SMC4-220ENST00000488017 IPO5O00410 1097 aaKnown RBP2.81□□□□□ -1.96
SMC4-220ENST00000488017 PEX12O00623 359 aa2.81□□□□□ -1.96
SMC4-220ENST00000488017 MOCS3O95396 460 aa2.81□□□□□ -1.96
SMC4-220ENST00000488017 NADKO95544 446 aaPredicted RBP2.81□□□□□ -1.96
SMC4-220ENST00000488017 FTCDO95954 541 aa2.81□□□□□ -1.96
SMC4-220ENST00000488017 GNAZP19086 355 aa2.81□□□□□ -1.96
SMC4-220ENST00000488017 NFKBIAP25963 317 aa2.81□□□□□ -1.96
SMC4-220ENST00000488017 POU1F1P28069 291 aa2.81□□□□□ -1.96
SMC4-220ENST00000488017 SNX16P57768 344 aa2.81□□□□□ -1.96
SMC4-220ENST00000488017 SNRPD1P62314 119 aaKnown RBP2.81□□□□□ -1.96
SMC4-220ENST00000488017 DECR1Q16698 335 aa2.81□□□□□ -1.96
SMC4-220ENST00000488017 TIGD6Q17RP2 521 aa2.81□□□□□ -1.96
SMC4-220ENST00000488017 GLIPR1L2Q4G1C9 344 aa2.81□□□□□ -1.96
SMC4-220ENST00000488017 PWWP2BQ6NUJ5 590 aa2.81□□□□□ -1.96
SMC4-220ENST00000488017 HAPLN4Q86UW8 402 aa2.81□□□□□ -1.96
SMC4-220ENST00000488017 DHX40Q8IX18 779 aaKnown RBP2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms