RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 ALOX12P18054 663 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 CD58P19256 250 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 RBMS1P29558 406 aaKnown RBP6.87□□□□□ -1.31
HDAC3-209ENST00000486618 CD70P32970 193 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 NNMTP40261 264 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 CCNFP41002 786 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 CSKP41240 450 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 MSH2P43246 934 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 PSMD8P48556 350 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 SLC11A2P49281 568 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 DUSP3P51452 185 aaPredicted RBP6.87□□□□□ -1.31
HDAC3-209ENST00000486618 ADPRHP54922 357 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 DLG4P78352 724 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 GBE1Q04446 702 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 SSPNQ14714 243 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 RAB41Q5JT25 222 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 PIK3R6Q5UE93 754 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 CDCP2Q5VXM1 449 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 PM20D1Q6GTS8 502 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 INO80CQ6PI98 192 aaPredicted RBP6.87□□□□□ -1.31
HDAC3-209ENST00000486618 MFN1Q8IWA4 741 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 ZC3H3Q8IXZ2 948 aaKnown RBP6.87□□□□□ -1.31
HDAC3-209ENST00000486618 CCDC170Q8IYT3 715 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 OR8H3Q8N146 312 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 SPC24Q8NBT2 197 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 IL17RDQ8NFM7 739 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 OR4C6Q8NH72 309 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 FIBINQ8TAL6 211 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 COG1Q8WTW3 980 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 TMEM174Q8WUU8 243 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 CDKL2Q92772 493 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 DHX58Q96C10 678 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 GRAMD1AQ96CP6 724 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 FAXDC2Q96IV6 333 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 VCPIP1Q96JH7 1222 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 SH3GL3Q99963 347 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 ZPBPQ9BS86 351 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 TRIM5Q9C035 493 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 MTG2Q9H4K7 406 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 LIN28AQ9H9Z2 209 aaKnown RBP6.87□□□□□ -1.31
HDAC3-209ENST00000486618 MAGEF1Q9HAY2 307 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 USP29Q9HBJ7 922 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 LRRC4Q9HBW1 653 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 CBX8Q9HC52 389 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 SLC39A2Q9NP94 309 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 WASH6PQ9NQA3 447 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 ABCC13Q9NSE7 274 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 AASSQ9UDR5 926 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 SERGEFQ9UGK8 458 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 PTBP2Q9UKA9 531 aaKnown RBP6.87□□□□□ -1.31
HDAC3-209ENST00000486618 SLC13A4Q9UKG4 626 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 PPM1HQ9ULR3 514 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 PCDHB1Q9Y5F3 818 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 AP1M2Q9Y6Q5 423 aa6.87□□□□□ -1.31
HDAC3-209ENST00000486618 CTAGE9A4FU28 777 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 NEMP2A6NFY4 417 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 A6NLC8 198 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 C10orf142B7Z368 130 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 PRAMEF26H0Y7S4 382 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 TRIM38O00635 465 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 PDXKO00764 312 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 RNGTTO60942 597 aaKnown RBP6.86□□□□□ -1.31
HDAC3-209ENST00000486618 SRGAP2O75044 1071 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 SDC3O75056 442 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 CSO75390 466 aaKnown RBP6.86□□□□□ -1.31
HDAC3-209ENST00000486618 PAGE1O75459 146 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 SLC22A3O75751 556 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 ENDOD1O94919 500 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 SERPINC1P01008 464 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 IL1BP01584 269 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 DHRS4L1P0CG22 281 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 CKMT1AP12532 417 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 HLA-DPA1P20036 260 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 BMP6P22004 513 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 PRKAR1BP31321 381 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 SOX6P35712 828 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 POLD2P49005 469 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 SRSF1Q07955 248 aaKnown RBP eCLIP6.86□□□□□ -1.31
HDAC3-209ENST00000486618 BNIP1Q12981 228 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 CDH18Q13634 790 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 STK38Q15208 465 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 ZNF362Q5T0B9 420 aaPredicted RBP6.86□□□□□ -1.31
HDAC3-209ENST00000486618 C9orf64Q5T6V5 341 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 FAM46CQ5VWP2 391 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 BSPRYQ5W0U4 402 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 ARHGAP17Q68EM7 881 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 CAPRIN2Q6IMN6 1127 aaKnown RBP6.86□□□□□ -1.31
HDAC3-209ENST00000486618 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.86□□□□□ -1.31
HDAC3-209ENST00000486618 TMC6Q7Z403 805 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 DSG4Q86SJ6 1040 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 SLC25A45Q8N413 288 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 TMCO5AQ8N6Q1 288 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 ANKRD52Q8NB46 1076 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 HJURPQ8NCD3 748 aaPredicted RBP6.86□□□□□ -1.31
HDAC3-209ENST00000486618 OR6C4Q8NGE1 309 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 GRIN3AQ8TCU5 1115 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 MIPOL1Q8TD10 442 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 ZFAND2BQ8WV99 257 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 ISL2Q96A47 359 aa6.86□□□□□ -1.31
HDAC3-209ENST00000486618 AZIN2Q96A70 460 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms