RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 EIF3BP55884 814 aaKnown RBP3.74□□□□□ -1.81
VPS41-213ENST00000485955 CLDN20P56880 219 aa3.74□□□□□ -1.81
VPS41-213ENST00000485955 OLIG2Q13516 323 aa3.74□□□□□ -1.81
VPS41-213ENST00000485955 PDSS1Q5T2R2 415 aa3.74□□□□□ -1.81
VPS41-213ENST00000485955 LCE1FQ5T754 118 aa3.74□□□□□ -1.81
VPS41-213ENST00000485955 OR7E24Q6IFN5 339 aa3.74□□□□□ -1.81
VPS41-213ENST00000485955 ACAD10Q6JQN1 1059 aa3.74□□□□□ -1.81
VPS41-213ENST00000485955 CDC73Q6P1J9 531 aa3.74□□□□□ -1.81
VPS41-213ENST00000485955 TSSK4Q6SA08 328 aa3.74□□□□□ -1.81
VPS41-213ENST00000485955 ATG9AQ7Z3C6 839 aa3.74□□□□□ -1.81
VPS41-213ENST00000485955 ARMC8Q8IUR7 673 aa3.74□□□□□ -1.81
VPS41-213ENST00000485955 SLC38A5Q8WUX1 472 aa3.74□□□□□ -1.81
VPS41-213ENST00000485955 TAAR8Q969N4 342 aa3.74□□□□□ -1.81
VPS41-213ENST00000485955 ZUFSPQ96AP4 578 aa3.74□□□□□ -1.81
VPS41-213ENST00000485955 PIP5K1AQ99755 562 aa3.74□□□□□ -1.81
VPS41-213ENST00000485955 SCPEP1Q9HB40 452 aa3.74□□□□□ -1.81
VPS41-213ENST00000485955 TCF19Q9Y242 345 aa3.74□□□□□ -1.81
VPS41-213ENST00000485955 ZCWPW2A0A1B0GU75 182 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 C1orf226A1L170 272 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 A6NLC8 198 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 FAM72CH0Y354 149 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 DVL1O14640 695 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 ZNF182P17025 639 aaPredicted RBP3.73□□□□□ -1.81
VPS41-213ENST00000485955 ARL1P40616 181 aaPredicted RBP3.73□□□□□ -1.81
VPS41-213ENST00000485955 DVL1P1P54792 670 aaPredicted RBP3.73□□□□□ -1.81
VPS41-213ENST00000485955 EEF1A1P68104 462 aaKnown RBP3.73□□□□□ -1.81
VPS41-213ENST00000485955 COG7P83436 770 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 RPL24P83731 157 aaKnown RBP3.73□□□□□ -1.81
VPS41-213ENST00000485955 TMEM115Q12893 351 aaPredicted RBP3.73□□□□□ -1.81
VPS41-213ENST00000485955 CDONQ4KMG0 1287 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 TMEM35AQ53FP2 167 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 SIRPB2Q5JXA9 342 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 DCST1Q5T197 706 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 FAM72AQ5TYM5 149 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 EEF1A1P5Q5VTE0 462 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 FAM72DQ6L9T8 149 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 TTI2Q6NXR4 508 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 FBXL22Q6P050 247 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 CACNA2D4Q7Z3S7 1137 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 FAM72BQ86X60 149 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 KLHDC9Q8NEP7 349 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 OR52I2Q8NH67 350 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 SLC44A1Q8WWI5 657 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 MMABQ96EY8 250 aaPredicted RBP3.73□□□□□ -1.81
VPS41-213ENST00000485955 NEUROD6Q96NK8 337 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 DUX3Q96PT4 197 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 EIF2AK1Q9BQI3 630 aaKnown RBP3.73□□□□□ -1.81
VPS41-213ENST00000485955 FKRPQ9H9S5 495 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 FBXL2Q9UKC9 423 aa3.73□□□□□ -1.81
VPS41-213ENST00000485955 C5orf60A6NFR6 353 aa3.72□□□□□ -1.81
VPS41-213ENST00000485955 NPIPB15A6NHN6 443 aaPredicted RBP3.72□□□□□ -1.81
VPS41-213ENST00000485955 EIF3CLB5ME19 914 aaKnown RBP3.72□□□□□ -1.81
VPS41-213ENST00000485955 FAM90A26D6RGX4 464 aa3.72□□□□□ -1.81
VPS41-213ENST00000485955 M0QZ24 198 aa3.72□□□□□ -1.81
VPS41-213ENST00000485955 TPD52L2O43399 206 aaKnown RBP3.72□□□□□ -1.81
VPS41-213ENST00000485955 KCNK5O95279 499 aa3.72□□□□□ -1.81
VPS41-213ENST00000485955 APOHP02749 345 aaPredicted RBP3.72□□□□□ -1.81
VPS41-213ENST00000485955 PRSS1P07477 247 aa3.72□□□□□ -1.81
VPS41-213ENST00000485955 FAM106CPP0CH98 169 aa3.72□□□□□ -1.81
VPS41-213ENST00000485955 ATP1A3P13637 1013 aa3.72□□□□□ -1.81
VPS41-213ENST00000485955 POLR2CP19387 275 aaPredicted RBP3.72□□□□□ -1.81
VPS41-213ENST00000485955 ARCN1P48444 511 aaKnown RBP3.72□□□□□ -1.81
VPS41-213ENST00000485955 AMPHP49418 695 aa3.72□□□□□ -1.81
VPS41-213ENST00000485955 MMP14P50281 582 aa3.72□□□□□ -1.81
VPS41-213ENST00000485955 SREBF2Q12772 1141 aa3.72□□□□□ -1.81
VPS41-213ENST00000485955 GPR180Q86V85 440 aa3.72□□□□□ -1.81
VPS41-213ENST00000485955 MAP7D3Q8IWC1 876 aa3.72□□□□□ -1.81
VPS41-213ENST00000485955 TSPYL6Q8N831 410 aa3.72□□□□□ -1.81
VPS41-213ENST00000485955 METTL6Q8TCB7 284 aa3.72□□□□□ -1.81
VPS41-213ENST00000485955 TMEM255BQ8WV15 326 aa3.72□□□□□ -1.81
VPS41-213ENST00000485955 ZNF524Q96C55 264 aa3.72□□□□□ -1.81
VPS41-213ENST00000485955 RRNAD1Q96FB5 475 aaKnown RBP3.72□□□□□ -1.81
VPS41-213ENST00000485955 LINGO1Q96FE5 620 aa3.72□□□□□ -1.81
VPS41-213ENST00000485955 TMEM68Q96MH6 324 aa3.72□□□□□ -1.81
VPS41-213ENST00000485955 DDX43Q9NXZ2 648 aaKnown RBP3.72□□□□□ -1.81
VPS41-213ENST00000485955 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.72□□□□□ -1.81
VPS41-213ENST00000485955 NOTCH3Q9UM47 2321 aa3.72□□□□□ -1.81
VPS41-213ENST00000485955 PRAG1Q86YV5 1406 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 A0A1W2PQF6 199 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 ANKRD28O15084 1053 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 KCNN4O15554 427 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 PAGE4O60829 102 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 MLYCDO95822 493 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 AGR2O95994 175 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 KRT10P13645 584 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 PAX1P15863 534 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 UGT1A1P22309 533 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 DCTP40126 519 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 RGS2P41220 211 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 UBA7P41226 1012 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 HOXA1P49639 335 aaPredicted RBP3.71□□□□□ -1.82
VPS41-213ENST00000485955 ATP12AP54707 1039 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 F2RL1P55085 397 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 CEBPZQ03701 1054 aaKnown RBP3.71□□□□□ -1.82
VPS41-213ENST00000485955 CDC16Q13042 620 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 FRG1Q14331 258 aaKnown RBP3.71□□□□□ -1.82
VPS41-213ENST00000485955 KRTCAP3Q53RY4 240 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 LCN10Q6JVE6 187 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 R3HCC1LQ7Z5L2 792 aaKnown RBP3.71□□□□□ -1.82
VPS41-213ENST00000485955 THAP6Q8TBB0 222 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms