RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 ZSCAN5AQ9BUG6 496 aa15.47■□□□□ 0.07
HMGA1-206ENST00000478214 FRMD8P1Q9BZ68 369 aaPredicted RBP15.47■□□□□ 0.07
HMGA1-206ENST00000478214 ARFGAP3Q9NP61 516 aa15.47■□□□□ 0.07
HMGA1-206ENST00000478214 PADI4Q9UM07 663 aa15.47■□□□□ 0.07
HMGA1-206ENST00000478214 PLEKHM1Q9Y4G2 1056 aa15.47■□□□□ 0.07
HMGA1-206ENST00000478214 GPSM3Q9Y4H4 160 aa15.47■□□□□ 0.07
HMGA1-206ENST00000478214 PCYT1BQ9Y5K3 369 aaPredicted RBP15.47■□□□□ 0.07
HMGA1-206ENST00000478214 ST14Q9Y5Y6 855 aa15.47■□□□□ 0.07
HMGA1-206ENST00000478214 OPA1O60313 960 aa15.46■□□□□ 0.07
HMGA1-206ENST00000478214 JUPP14923 745 aa15.46■□□□□ 0.07
HMGA1-206ENST00000478214 CXCR5P32302 372 aa15.46■□□□□ 0.07
HMGA1-206ENST00000478214 CTBSQ01459 385 aa15.46■□□□□ 0.07
HMGA1-206ENST00000478214 ILF3Q12906 894 aaKnown RBP eCLIP15.46■□□□□ 0.07
HMGA1-206ENST00000478214 SNX1Q13596 522 aa15.46■□□□□ 0.07
HMGA1-206ENST00000478214 PYCR3Q53H96 274 aa15.46■□□□□ 0.07
HMGA1-206ENST00000478214 PERM1Q5SV97 790 aa15.46■□□□□ 0.07
HMGA1-206ENST00000478214 ZNF648Q5T619 568 aaPredicted RBP15.46■□□□□ 0.07
HMGA1-206ENST00000478214 UNQ6494/PRO21346Q6UXR6 183 aa15.46■□□□□ 0.07
HMGA1-206ENST00000478214 RTP4Q96DX8 246 aa15.46■□□□□ 0.07
HMGA1-206ENST00000478214 PPP1R2P1Q96PQ5 205 aa15.46■□□□□ 0.07
HMGA1-206ENST00000478214 OR2M4Q96R27 311 aa15.46■□□□□ 0.07
HMGA1-206ENST00000478214 TBL1YQ9BQ87 522 aa15.46■□□□□ 0.07
HMGA1-206ENST00000478214 GSDMCQ9BYG8 508 aa15.46■□□□□ 0.07
HMGA1-206ENST00000478214 IL26Q9NPH9 171 aa15.46■□□□□ 0.07
HMGA1-206ENST00000478214 SPATS2LQ9NUQ6 558 aaKnown RBP15.46■□□□□ 0.07
HMGA1-206ENST00000478214 IL17CQ9P0M4 197 aa15.46■□□□□ 0.07
HMGA1-206ENST00000478214 VPS18Q9P253 973 aa15.46■□□□□ 0.07
HMGA1-206ENST00000478214 ZNF148Q9UQR1 794 aa15.46■□□□□ 0.07
HMGA1-206ENST00000478214 PRKAB1Q9Y478 270 aa15.46■□□□□ 0.07
HMGA1-206ENST00000478214 KNTC1P50748 2209 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 IGF2RP11717 2491 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 B4DGG1 531 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 CEP104O60308 925 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 NOBOXO60393 691 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 DNAJC6O75061 913 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 SLC25A14O95258 325 aaPredicted RBP15.45■□□□□ 0.06
HMGA1-206ENST00000478214 IFNB1P01574 187 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 FGGP02679 453 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 GP1BAP07359 652 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 STIP1P31948 543 aaKnown RBP15.45■□□□□ 0.06
HMGA1-206ENST00000478214 PTPRCAPQ14761 206 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 ATP13A5Q4VNC0 1218 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 KCTD11Q693B1 232 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 PDPK2PQ6A1A2 396 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 DENND5AQ6IQ26 1287 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 OGFOD3Q6PK18 319 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 SLC30A9Q6PML9 568 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 GALNT13Q8IUC8 556 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 GPR156Q8NFN8 814 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 MAPK15Q8TD08 544 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 NAT6Q93015 286 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 GLYATL1Q969I3 302 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 PLEKHG4BQ96PX9 1271 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 DPEP2Q9H4A9 486 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 TRMT1Q9NXH9 659 aaKnown RBP15.45■□□□□ 0.06
HMGA1-206ENST00000478214 TAAR2Q9P1P5 351 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 TMPRSS11EQ9UL52 423 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 ARL5AQ9Y689 179 aa15.45■□□□□ 0.06
HMGA1-206ENST00000478214 ASXL3Q9C0F0 2248 aa15.44■□□□□ 0.06
HMGA1-206ENST00000478214 CASC3O15234 703 aaKnown RBP15.44■□□□□ 0.06
HMGA1-206ENST00000478214 STX7O15400 261 aaKnown RBP15.44■□□□□ 0.06
HMGA1-206ENST00000478214 ZSCAN12O43309 604 aa15.44■□□□□ 0.06
HMGA1-206ENST00000478214 MT-CO3P00414 261 aa15.44■□□□□ 0.06
HMGA1-206ENST00000478214 SPAM1P38567 509 aa15.44■□□□□ 0.06
HMGA1-206ENST00000478214 TARDBPQ13148 414 aaKnown RBP eCLIP15.44■□□□□ 0.06
HMGA1-206ENST00000478214 MSLNQ13421 630 aaPredicted RBP15.44■□□□□ 0.06
HMGA1-206ENST00000478214 CAMK2BQ13554 666 aa15.44■□□□□ 0.06
HMGA1-206ENST00000478214 P3H1Q32P28 736 aa15.44■□□□□ 0.06
HMGA1-206ENST00000478214 PRUNE1Q86TP1 453 aa15.44■□□□□ 0.06
HMGA1-206ENST00000478214 PDCD7Q8N8D1 485 aaKnown RBP15.44■□□□□ 0.06
HMGA1-206ENST00000478214 ABCG4Q9H172 646 aa15.44■□□□□ 0.06
HMGA1-206ENST00000478214 OR2AG1Q9H205 316 aa15.44■□□□□ 0.06
HMGA1-206ENST00000478214 ARNT2Q9HBZ2 717 aa15.44■□□□□ 0.06
HMGA1-206ENST00000478214 ATXN10Q9UBB4 475 aa15.44■□□□□ 0.06
HMGA1-206ENST00000478214 ZNHIT2Q9UHR6 403 aa15.44■□□□□ 0.06
HMGA1-206ENST00000478214 RABGEF1Q9UJ41 708 aa15.44■□□□□ 0.06
HMGA1-206ENST00000478214 CLCA2Q9UQC9 943 aa15.44■□□□□ 0.06
HMGA1-206ENST00000478214 PKP3Q9Y446 797 aa15.44■□□□□ 0.06
HMGA1-206ENST00000478214 JRKLQ9Y4A0 524 aa15.44■□□□□ 0.06
HMGA1-206ENST00000478214 KCTD3Q9Y597 815 aa15.44■□□□□ 0.06
HMGA1-206ENST00000478214 EPG5Q9HCE0 2579 aa15.44■□□□□ 0.06
HMGA1-206ENST00000478214 PTPRBP23467 1997 aa15.44■□□□□ 0.06
HMGA1-206ENST00000478214 MAP1BP46821 2468 aaKnown RBP15.43■□□□□ 0.06
HMGA1-206ENST00000478214 GAPDHSO14556 408 aaPredicted RBP15.43■□□□□ 0.06
HMGA1-206ENST00000478214 GPR39O43194 453 aa15.43■□□□□ 0.06
HMGA1-206ENST00000478214 UGT1A9O60656 530 aa15.43■□□□□ 0.06
HMGA1-206ENST00000478214 MTX2O75431 263 aa15.43■□□□□ 0.06
HMGA1-206ENST00000478214 AP2A1O95782 977 aa15.43■□□□□ 0.06
HMGA1-206ENST00000478214 ETS1P14921 441 aa15.43■□□□□ 0.06
HMGA1-206ENST00000478214 ZNF8P17098 575 aaPredicted RBP15.43■□□□□ 0.06
HMGA1-206ENST00000478214 UGT1A6P19224 532 aa15.43■□□□□ 0.06
HMGA1-206ENST00000478214 LPOP22079 712 aaPredicted RBP15.43■□□□□ 0.06
HMGA1-206ENST00000478214 UGT1A1P22309 533 aa15.43■□□□□ 0.06
HMGA1-206ENST00000478214 UGT1A4P22310 534 aa15.43■□□□□ 0.06
HMGA1-206ENST00000478214 UGT1A3P35503 534 aa15.43■□□□□ 0.06
HMGA1-206ENST00000478214 UGT1A5P35504 534 aa15.43■□□□□ 0.06
HMGA1-206ENST00000478214 ACTR1BP42025 376 aa15.43■□□□□ 0.06
HMGA1-206ENST00000478214 ACTR1AP61163 376 aa15.43■□□□□ 0.06
HMGA1-206ENST00000478214 TAF1AQ15573 450 aaPredicted RBP15.43■□□□□ 0.06
HMGA1-206ENST00000478214 CHRNA6Q15825 494 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms