RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 POLR2LP62875 67 aaKnown RBP11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 TRAF2Q12933 501 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 FZD2Q14332 565 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 IHHQ14623 411 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 NR0B2Q15466 257 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 SLC14A2Q15849 920 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 UGP2Q16851 508 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 TMEM52BQ4KMG9 183 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 LRRC73Q5JTD7 316 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 BORAQ6PGQ7 559 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 VASH2Q86V25 355 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 ZNF567Q8N184 647 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 C17orf53Q8N3J3 647 aaPredicted RBP11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 RASGEF1CQ8N431 466 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 PAF1Q8N7H5 531 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 ZNF548Q8NEK5 533 aaPredicted RBP11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 CXorf40AQ8TE69 158 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 ATG4AQ8WYN0 398 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 IMP4Q96G21 291 aaKnown RBP11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 WDR24Q96S15 920 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 SLC25A51Q9H1U9 297 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 GLOD4Q9HC38 313 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 GGT7Q9UJ14 662 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 TRHDEQ9UKU6 1024 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 DNPEPQ9ULA0 475 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 SNX12Q9UMY4 172 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 PLAAQ9Y263 795 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 ITM2BQ9Y287 266 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 PCDHB11Q9Y5F2 797 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 PCDHGC4Q9Y5F7 938 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 C2CD3Q4AC94 2353 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 CFAP69A5D8W1 941 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 H3BM21 787 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 NTN3O00634 580 aaPredicted RBP11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 CES2O00748 559 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 TPP1O14773 563 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 AQP9O43315 295 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 FZD6O60353 706 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 MMP20O60882 483 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 STK10O94804 968 aaKnown RBP11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 PGLSO95336 258 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 CPP00450 1065 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 NME1P15531 152 aaKnown RBP11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 TCP1P17987 556 aaKnown RBP11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 NFKB1P19838 968 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 POU3F2P20265 443 aaPredicted RBP11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 CA4P22748 312 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 CD97P48960 835 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 RPIAP49247 311 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 POLE2P56282 527 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 PTK2BQ14289 1009 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 OASLQ15646 514 aaKnown RBP11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 CCNG2Q16589 344 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 LONRF2Q1L5Z9 754 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 DEFB133Q30KQ1 61 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 FAM182AQ5T1J6 154 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 ARMC12Q5T9G4 340 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 PID1Q7Z2X4 250 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 PARGQ86W56 976 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 DTX1Q86Y01 620 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 PDCD6IPQ8WUM4 868 aaKnown RBP11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 BTN2A2Q8WVV5 523 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 C1orf54Q8WWF1 131 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 GLMNQ92990 594 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 NAT6Q93015 286 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 TADA1Q96BN2 335 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 TRIM44Q96DX7 344 aaPredicted RBP11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 NAPGQ99747 312 aaPredicted RBP11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 CCDC3Q9BQI4 270 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 SLC12A9Q9BXP2 914 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 TDRD1Q9BXT4 1180 aaKnown RBP11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 STRADBQ9C0K7 418 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 EPB41L5Q9HCM4 733 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 RSPH14Q9UHP6 348 aa11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 TTC7AQ9ULT0 858 aaPredicted RBP11.88□□□□□ -0.51
SQSTM1-206ENST00000466342 PDHA1P08559 390 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 JMJD7P0C870 316 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 ITIH2P19823 946 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 NFKBIAP25963 317 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 THOP1P52888 689 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 PDE1CQ14123 709 aaPredicted RBP11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 AGERQ15109 404 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 ANKRD20A2Q5SQ80 823 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 ANKRD20A1Q5TYW2 823 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 ANKRD20A3Q5VUR7 823 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 PAPD7Q5XG87 772 aaKnown RBP11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 ITPRIPL1Q6GPH6 555 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 ERAP2Q6P179 960 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 DRICH1Q6PGQ1 229 aaPredicted RBP11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 ATCAYQ86WG3 371 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 SPATA22Q8NHS9 363 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 ACTRT1Q8TDG2 376 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 COG1Q8WTW3 980 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 MIB2Q96AX9 1013 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 MS4A14Q96JA4 679 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 SPATA13Q96N96 652 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 FCRL5Q96RD9 977 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 RBM15Q96T37 977 aaKnown RBP eCLIP11.87□□□□□ -0.512e-6■■■□□ 15.9
SQSTM1-206ENST00000466342 NAP1L3Q99457 506 aaPredicted RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms