RNA–Protein interactions for RNA: ENST00000456246.1

MSH6-207, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 846 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-207ENST00000456246 KLHL8Q9P2G9 620 aaPredicted RBP17.73■□□□□ 0.43
MSH6-207ENST00000456246 SAE1Q9UBE0 346 aaPredicted RBP17.73■□□□□ 0.43
MSH6-207ENST00000456246 RALYQ9UKM9 306 aaKnown RBP17.73■□□□□ 0.43
MSH6-207ENST00000456246 TRHDEQ9UKU6 1024 aa17.73■□□□□ 0.43
MSH6-207ENST00000456246 A0A1W2PNU3 283 aaPredicted RBP17.72■□□□□ 0.43
MSH6-207ENST00000456246 CCDC66A2RUB6 948 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 CDRT15L2A8MXV6 281 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 DNAJC6O75061 913 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 ECEL1O95672 775 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 CPNE6O95741 557 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 MT-CYBP00156 380 aaPredicted RBP17.72■□□□□ 0.43
MSH6-207ENST00000456246 EPOP01588 193 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 ITPKBP27987 946 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 NAP1L1P55209 391 aaKnown RBP17.72■□□□□ 0.43
MSH6-207ENST00000456246 MAZP56270 477 aaKnown RBP17.72■□□□□ 0.43
MSH6-207ENST00000456246 CCDC173Q0VFZ6 552 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 WASHC5Q12768 1159 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 MAP9Q49MG5 647 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 CCDC181Q5TID7 509 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 MARK2Q7KZI7 788 aaKnown RBP17.72■□□□□ 0.43
MSH6-207ENST00000456246 RAB11FIP2Q7L804 512 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 TMC3Q7Z5M5 1100 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 B3GNT8Q7Z7M8 397 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 SPACA3Q8IXA5 215 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 NAGSQ8N159 534 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 FBXO39Q8N4B4 442 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 TRAM1L1Q8N609 369 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 SPATA22Q8NHS9 363 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 PTCD2Q8WV60 388 aaKnown RBP17.72■□□□□ 0.43
MSH6-207ENST00000456246 KCNE4Q8WWG9 221 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 HTR3CQ8WXA8 447 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 PRR11Q96HE9 360 aaPredicted RBP17.72■□□□□ 0.43
MSH6-207ENST00000456246 DPYSL5Q9BPU6 564 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 CARD9Q9H257 536 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 CNOT6Q9ULM6 557 aaKnown RBP17.72■□□□□ 0.43
MSH6-207ENST00000456246 PCDHA3Q9Y5H8 950 aa17.72■□□□□ 0.43
MSH6-207ENST00000456246 NBEAQ8NFP9 2946 aa17.71■□□□□ 0.43
MSH6-207ENST00000456246 FADS2P1A8MWK0 482 aa17.71■□□□□ 0.43
MSH6-207ENST00000456246 PMPCBO75439 489 aa17.71■□□□□ 0.43
MSH6-207ENST00000456246 TNFSF15O95150 251 aa17.71■□□□□ 0.43
MSH6-207ENST00000456246 SLC2A4P14672 509 aa17.71■□□□□ 0.43
MSH6-207ENST00000456246 PTPN7P35236 360 aa17.71■□□□□ 0.43
MSH6-207ENST00000456246 MARCKSL1P49006 195 aa17.71■□□□□ 0.43
MSH6-207ENST00000456246 VAV2P52735 878 aa17.71■□□□□ 0.43
MSH6-207ENST00000456246 B4GALNT1Q00973 533 aa17.71■□□□□ 0.43
MSH6-207ENST00000456246 TLE3Q04726 772 aa17.71■□□□□ 0.43
MSH6-207ENST00000456246 ZFP36L1Q07352 338 aaKnown RBP17.71■□□□□ 0.43
MSH6-207ENST00000456246 ZDHHC20Q5W0Z9 365 aa17.71■□□□□ 0.43
MSH6-207ENST00000456246 KDELC2Q7Z4H8 507 aa17.71■□□□□ 0.43
MSH6-207ENST00000456246 PIM3Q86V86 326 aa17.71■□□□□ 0.43
MSH6-207ENST00000456246 ZC3H18Q86VM9 953 aaKnown RBP17.71■□□□□ 0.43
MSH6-207ENST00000456246 KRT35Q92764 455 aa17.71■□□□□ 0.43
MSH6-207ENST00000456246 PLEKHG4BQ96PX9 1271 aa17.71■□□□□ 0.43
MSH6-207ENST00000456246 FCRL5Q96RD9 977 aa17.71■□□□□ 0.43
MSH6-207ENST00000456246 SPATA16Q9BXB7 569 aa17.71■□□□□ 0.43
MSH6-207ENST00000456246 STN1Q9H668 368 aaKnown RBP17.71■□□□□ 0.43
MSH6-207ENST00000456246 HACD3Q9P035 362 aa17.71■□□□□ 0.43
MSH6-207ENST00000456246 AKAP7Q9P0M2 348 aaPredicted RBP17.71■□□□□ 0.43
MSH6-207ENST00000456246 ZNHIT2Q9UHR6 403 aa17.71■□□□□ 0.43
MSH6-207ENST00000456246 TFR2Q9UP52 801 aa17.71■□□□□ 0.43
MSH6-207ENST00000456246 SHOC2Q9UQ13 582 aa17.71■□□□□ 0.43
MSH6-207ENST00000456246 PCDHGA7Q9Y5G6 932 aa17.71■□□□□ 0.43
MSH6-207ENST00000456246 KIF26BQ2KJY2 2108 aa17.71■□□□□ 0.42
MSH6-207ENST00000456246 ZFC3H1O60293 1989 aaKnown RBP17.7■□□□□ 0.42
MSH6-207ENST00000456246 LOC285095A0A1B0GVY8 99 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 CASC3O15234 703 aaKnown RBP17.7■□□□□ 0.42
MSH6-207ENST00000456246 PJA2O43164 708 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 ATP1A1P05023 1023 aaKnown RBP17.7■□□□□ 0.42
MSH6-207ENST00000456246 NFKB1P19838 968 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 CTNNA2P26232 953 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 CD68P34810 354 aaPredicted RBP17.7■□□□□ 0.42
MSH6-207ENST00000456246 FASLGP48023 281 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 WNT3AP56704 352 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 ADCY2Q08462 1091 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 MPP3Q13368 585 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 NOMO1Q15155 1222 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 LLGL1Q15334 1064 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 FOXR1Q6PIV2 292 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 B4GALNT4Q76KP1 1039 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 PID1Q7Z2X4 250 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 PHYKPLQ8IUZ5 450 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 SLITRK4Q8IW52 837 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 SFTPA2Q8IWL1 248 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 AVL9Q8NBF6 648 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 EID2BQ96D98 161 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 CMKLR1Q99788 373 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 BAG1Q99933 345 aaPredicted RBP17.7■□□□□ 0.42
MSH6-207ENST00000456246 HERPUD2Q9BSE4 406 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 FOXP3Q9BZS1 431 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 PRORYQ9H606 182 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 TRIM39Q9HCM9 518 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.7■□□□□ 0.42
MSH6-207ENST00000456246 IMPACTQ9P2X3 320 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 ST14Q9Y5Y6 855 aa17.7■□□□□ 0.42
MSH6-207ENST00000456246 OAS3Q9Y6K5 1087 aaKnown RBP17.7■□□□□ 0.42
MSH6-207ENST00000456246 RCCD1A6NED2 376 aa17.69■□□□□ 0.42
MSH6-207ENST00000456246 NUAK1O60285 661 aa17.69■□□□□ 0.42
MSH6-207ENST00000456246 SLC25A14O95258 325 aaPredicted RBP17.69■□□□□ 0.42
MSH6-207ENST00000456246 SLC4A1P02730 911 aa17.69■□□□□ 0.42
MSH6-207ENST00000456246 PIRTP0C851 137 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms