RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 TTMPQ5BVD1 217 aa10.92□□□□□ -0.66
SCN9A-205ENST00000454569 STRA8Q7Z7C7 330 aa10.92□□□□□ -0.66
SCN9A-205ENST00000454569 LRRC6Q86X45 466 aa10.92□□□□□ -0.66
SCN9A-205ENST00000454569 CILP2Q8IUL8 1156 aa10.92□□□□□ -0.66
SCN9A-205ENST00000454569 GOLGA6L1Q8N7Z2 621 aa10.92□□□□□ -0.66
SCN9A-205ENST00000454569 C2CD4AQ8NCU7 369 aaPredicted RBP10.92□□□□□ -0.66
SCN9A-205ENST00000454569 TSTD1Q8NFU3 115 aa10.92□□□□□ -0.66
SCN9A-205ENST00000454569 RAB7BQ96AH8 199 aa10.92□□□□□ -0.66
SCN9A-205ENST00000454569 DTD2Q96FN9 168 aa10.92□□□□□ -0.66
SCN9A-205ENST00000454569 ATXN7L3BQ96GX2 97 aa10.92□□□□□ -0.66
SCN9A-205ENST00000454569 SH3GL2Q99962 352 aa10.92□□□□□ -0.66
SCN9A-205ENST00000454569 BOCQ9BWV1 1114 aa10.92□□□□□ -0.66
SCN9A-205ENST00000454569 FAM83DQ9H4H8 585 aa10.92□□□□□ -0.66
SCN9A-205ENST00000454569 MBNL1Q9NR56 388 aaKnown RBP10.92□□□□□ -0.66
SCN9A-205ENST00000454569 CATSPERZQ9NTU4 200 aa10.92□□□□□ -0.66
SCN9A-205ENST00000454569 FAM53CQ9NYF3 392 aa10.92□□□□□ -0.66
SCN9A-205ENST00000454569 OGFRQ9NZT2 677 aa10.92□□□□□ -0.66
SCN9A-205ENST00000454569 ZFATQ9P243 1243 aa10.92□□□□□ -0.66
SCN9A-205ENST00000454569 BCCIPQ9P287 314 aaKnown RBP eCLIP10.92□□□□□ -0.66
SCN9A-205ENST00000454569 MTO1Q9Y2Z2 717 aaKnown RBP10.92□□□□□ -0.66
SCN9A-205ENST00000454569 SPAG17Q6Q759 2223 aa10.92□□□□□ -0.66
SCN9A-205ENST00000454569 VPS13AQ96RL7 3174 aa10.92□□□□□ -0.66
SCN9A-205ENST00000454569 TBC1D3DA0A087WVF3 549 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 TBC1D3IA0A087WXS9 549 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 TBC1D3EA0A087X179 549 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 TBC1D3KA0A087X1G2 549 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 A0A1W2PQU0 124 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 TBC1D3FA6NER0 549 aaPredicted RBP10.91□□□□□ -0.66
SCN9A-205ENST00000454569 TMEM221A6NGB7 291 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 AGAP14A8MT82 685 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 TBC1D3LB9A6J9 549 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 H0Y858 1186 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 H3BQF6 201 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 M0R296 226 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 WNT9AO14904 365 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 RNGTTO60942 597 aaKnown RBP10.91□□□□□ -0.66
SCN9A-205ENST00000454569 ATG13O75143 517 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 PRAMEF1O95521 474 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 PAK4O96013 591 aaPredicted RBP10.91□□□□□ -0.66
SCN9A-205ENST00000454569 TBC1D3HP0C7X1 549 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 ACADMP11310 421 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 HADHAP40939 763 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 MSH2P43246 934 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 SUOXP51687 545 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 PDE1BQ01064 536 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 CREB5Q02930 508 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 PPARDQ03181 441 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 ZBTB16Q05516 673 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 LAMB3Q13751 1172 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 THOC5Q13769 683 aaKnown RBP10.91□□□□□ -0.66
SCN9A-205ENST00000454569 KLHL38Q2WGJ6 581 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 RBM20Q5T481 1227 aaKnown RBP10.91□□□□□ -0.66
SCN9A-205ENST00000454569 HENMT1Q5T8I9 393 aaKnown RBP10.91□□□□□ -0.66
SCN9A-205ENST00000454569 ARMC3Q5W041 872 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 TBC1D3GQ6DHY5 549 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 TBC1D3CQ6IPX1 549 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 ZNF549Q6P9A3 640 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 USP30Q70CQ3 517 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 TBC1D3Q8IZP1 549 aaPredicted RBP10.91□□□□□ -0.66
SCN9A-205ENST00000454569 TMEM105Q8N8V8 129 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 GPR150Q8NGU9 434 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 ZNF398Q8TD17 642 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 CXorf40AQ8TE69 158 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 GLMNQ92990 594 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 SRPK1Q96SB4 655 aaKnown RBP10.91□□□□□ -0.66
SCN9A-205ENST00000454569 ASB8Q9H765 288 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 TMBIM4Q9HC24 238 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 MED4Q9NPJ6 270 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 PKD2L2Q9NZM6 624 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 CNOT6Q9ULM6 557 aaKnown RBP10.91□□□□□ -0.66
SCN9A-205ENST00000454569 FZD4Q9ULV1 537 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 CRYL1Q9Y2S2 319 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 PRSS21Q9Y6M0 314 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 ZFC3H1O60293 1989 aaKnown RBP10.91□□□□□ -0.66
SCN9A-205ENST00000454569 LAMA1P25391 3075 aa10.91□□□□□ -0.66
SCN9A-205ENST00000454569 KMT2EQ8IZD2 1858 aa10.9□□□□□ -0.66
SCN9A-205ENST00000454569 TRBV5-4A0A0C4DH59 114 aa10.9□□□□□ -0.66
SCN9A-205ENST00000454569 PSMD11O00231 422 aa10.9□□□□□ -0.66
SCN9A-205ENST00000454569 HRO43593 1189 aa10.9□□□□□ -0.66
SCN9A-205ENST00000454569 TSPAN6O43657 245 aa10.9□□□□□ -0.66
SCN9A-205ENST00000454569 LZTS3O60299 673 aaPredicted RBP10.9□□□□□ -0.66
SCN9A-205ENST00000454569 OPA1O60313 960 aa10.9□□□□□ -0.66
SCN9A-205ENST00000454569 MTX2O75431 263 aa10.9□□□□□ -0.66
SCN9A-205ENST00000454569 PAMP19021 973 aa10.9□□□□□ -0.66
SCN9A-205ENST00000454569 AOC1P19801 751 aa10.9□□□□□ -0.66
SCN9A-205ENST00000454569 CXCL12P48061 93 aa10.9□□□□□ -0.66
SCN9A-205ENST00000454569 LEPRP48357 1165 aaKnown RBP10.9□□□□□ -0.66
SCN9A-205ENST00000454569 LSM11P83369 360 aaKnown RBP eCLIP10.9□□□□□ -0.66
SCN9A-205ENST00000454569 B4GALNT1Q00973 533 aa10.9□□□□□ -0.66
SCN9A-205ENST00000454569 TIAL1Q01085 375 aaKnown RBP eCLIP10.9□□□□□ -0.66
SCN9A-205ENST00000454569 CACNG1Q06432 222 aa10.9□□□□□ -0.66
SCN9A-205ENST00000454569 NFATC2Q13469 925 aa10.9□□□□□ -0.66
SCN9A-205ENST00000454569 TMED2Q15363 201 aa10.9□□□□□ -0.66
SCN9A-205ENST00000454569 DBN1Q16643 649 aa10.9□□□□□ -0.66
SCN9A-205ENST00000454569 WSCD2Q2TBF2 565 aa10.9□□□□□ -0.66
SCN9A-205ENST00000454569 ZNF284Q2VY69 593 aa10.9□□□□□ -0.66
SCN9A-205ENST00000454569 TTC31Q49AM3 519 aaPredicted RBP10.9□□□□□ -0.66
SCN9A-205ENST00000454569 TNFAIP8L3Q5GJ75 292 aa10.9□□□□□ -0.66
SCN9A-205ENST00000454569 MROH9Q5TGP6 573 aa10.9□□□□□ -0.66
SCN9A-205ENST00000454569 AFTPHQ6ULP2 937 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms