RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 CAPN13Q6MZZ7 669 aaPredicted RBP7.37□□□□□ -1.23
SYNE1-213ENST00000448038 CUZD1Q86UP6 607 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 SLC39A11Q8N1S5 342 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 TMEM132CQ8N3T6 1108 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 GPR156Q8NFN8 814 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 TOP1MTQ969P6 601 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 OTUB2Q96DC9 234 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 SH3GL2Q99962 352 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 HPS4Q9NQG7 708 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 INTS10Q9NVR2 710 aaKnown RBP7.37□□□□□ -1.23
SYNE1-213ENST00000448038 TRAF6Q9Y4K3 522 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 SNX13Q9Y5W8 968 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 SRRM3A6NNA2 597 aaPredicted RBP7.37□□□□□ -1.23
SYNE1-213ENST00000448038 TMEM189-UBE2V1I3L0A0 370 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 UGT1A9O60656 530 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 EDF1O60869 148 aaKnown RBP7.37□□□□□ -1.23
SYNE1-213ENST00000448038 STC2O76061 302 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 RASGRP1O95267 797 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 HPGDP15428 266 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 FGFR3P22607 806 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 GCKP35557 465 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 RPIAP49247 311 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 ACAP2Q15057 778 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 PITRM1Q5JRX3 1037 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 C22orf39Q6P5X5 142 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 BRAT1Q6PJG6 821 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 LYSMD3Q7Z3D4 306 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 SNX20Q7Z614 316 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 CPNE9Q8IYJ1 553 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 IGSF8Q969P0 613 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 CDKN2AIPNLQ96HQ2 116 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 UGT1A7Q9HAW7 530 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 UGT1A10Q9HAW8 530 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 UGT1A8Q9HAW9 530 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 ACSS2Q9NR19 701 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 C6orf203Q9P0P8 240 aaPredicted RBP7.37□□□□□ -1.23
SYNE1-213ENST00000448038 MAFFQ9ULX9 164 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 SORCS3Q9UPU3 1222 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 ENTPD4Q9Y227 616 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 MYH10P35580 1976 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 TAF1LQ8IZX4 1826 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 TRBV23OR9-2A0A075B6M9 112 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 ANKRD66B4E2M5 251 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 WNT9AO14904 365 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 PROCP04070 461 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 MTHFRP42898 656 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 HK2P52789 917 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 OLIG2Q13516 323 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 LRRC23Q53EV4 343 aaPredicted RBP7.37□□□□□ -1.23
SYNE1-213ENST00000448038 TCHHL1Q5QJ38 904 aaPredicted RBP7.37□□□□□ -1.23
SYNE1-213ENST00000448038 PATL1Q86TB9 770 aaKnown RBP7.37□□□□□ -1.23
SYNE1-213ENST00000448038 TCAIMQ8N3R3 496 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 SIDT2Q8NBJ9 832 aaKnown RBP7.37□□□□□ -1.23
SYNE1-213ENST00000448038 FIG4Q92562 907 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 CDRT15Q96T59 188 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 CDH19Q9H159 772 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 EVA1BQ9NVM1 165 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 EDDM13A0A1B0GTR0 161 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 RASSF9O75901 435 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 ZNF23P17027 643 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 UGT1A6P19224 532 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 UGT1A1P22309 533 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 UGT1A4P22310 534 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 UGT1A3P35503 534 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 UGT1A5P35504 534 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 UBE3AQ05086 875 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 SQLEQ14534 574 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 TRMT5Q32P41 509 aaKnown RBP7.36□□□□□ -1.23
SYNE1-213ENST00000448038 LDLRAP1Q5SW96 308 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 RNF43Q68DV7 783 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 C2orf73Q8N5S3 287 aaPredicted RBP7.36□□□□□ -1.23
SYNE1-213ENST00000448038 TMEM174Q8WUU8 243 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 PLEKHA8Q96JA3 519 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 NSMCE2Q96MF7 247 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 ZDHHC4Q9NPG8 344 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 AKAP7Q9P0M2 348 aaPredicted RBP7.36□□□□□ -1.23
SYNE1-213ENST00000448038 H0Y858 1186 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 STK16O75716 305 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 KLF1Q13351 362 aaPredicted RBP7.36□□□□□ -1.23
SYNE1-213ENST00000448038 PRKD1Q15139 912 aaPredicted RBP7.36□□□□□ -1.23
SYNE1-213ENST00000448038 PLEKHG6Q3KR16 790 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 RAB6CQ53S08 254 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 PIK3R6Q5UE93 754 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 C17orf64Q86WR6 236 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 ZNF513Q8N8E2 541 aaPredicted RBP7.36□□□□□ -1.23
SYNE1-213ENST00000448038 GFM2Q969S9 779 aaKnown RBP7.36□□□□□ -1.23
SYNE1-213ENST00000448038 SPACA7Q96KW9 195 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 RAB6CQ9H0N0 254 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 SPHK2Q9NRA0 654 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 TMEM216Q9P0N5 145 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 SLC17A6Q9P2U8 582 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 PSME2Q9UL46 239 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 C15orf38-AP3S2A0A0A6YYH1 394 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 HOXD8P13378 290 aaPredicted RBP7.36□□□□□ -1.23
SYNE1-213ENST00000448038 MPSTP25325 297 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 NAE1Q13564 534 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 FAM26DQ5JW98 314 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 ZYG11AQ6WRX3 759 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 PAGE2Q7Z2X7 111 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 ARPINQ7Z6K5 226 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms