RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 KDM1AO60341 852 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 HSPA8P11142 646 aaKnown RBP8.61□□□□□ -1.03
USP40-203ENST00000427112 SLC2A3P11169 496 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 ALOX15P16050 662 aaPredicted RBP8.61□□□□□ -1.03
USP40-203ENST00000427112 AGXTP21549 392 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 FASP25445 335 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 GJA8P48165 433 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 GSK3BP49841 420 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 GTF2H3Q13889 308 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 SIM2Q14190 667 aaPredicted RBP8.61□□□□□ -1.03
USP40-203ENST00000427112 PTGR1Q14914 329 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 MEP1AQ16819 746 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 UGP2Q16851 508 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 ZNF792Q3KQV3 632 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 ZNF549Q6P9A3 640 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 SPESP1Q6UW49 350 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 AGMOQ6ZNB7 445 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 CHERPQ8IWX8 916 aaKnown RBP8.61□□□□□ -1.03
USP40-203ENST00000427112 LMNTD1Q8N9Z9 388 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 POLG2Q9UHN1 485 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 NBNO60934 754 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 GLP2RO95838 553 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 ATXN8OSP0DMR3 200 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 TCF3P15923 654 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 UGT1A4P22310 534 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 UGT1A3P35503 534 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 UGT1A5P35504 534 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 RGRP47804 291 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 GEMP55040 296 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 UGT3A2Q3SY77 523 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 PABPC1LQ4VXU2 614 aaKnown RBP8.61□□□□□ -1.03
USP40-203ENST00000427112 METTL21CQ5VZV1 264 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 IL27RAQ6UWB1 636 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 ADGRG6Q86SQ4 1221 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 FBXO39Q8N4B4 442 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 AFAP1L2Q8N4X5 818 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 LINC01465Q8N7H1 131 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 SLC2A13Q96QE2 648 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 HGH1Q9BTY7 390 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 CENPOQ9BU64 300 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 SLC25A23Q9BV35 468 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 RERGLQ9H628 205 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 CCSER2Q9H7U1 834 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 CLK4Q9HAZ1 481 aaKnown RBP8.61□□□□□ -1.03
USP40-203ENST00000427112 EIF2B3Q9NR50 452 aaKnown RBP8.61□□□□□ -1.03
USP40-203ENST00000427112 GKN1Q9NS71 199 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 FARSBQ9NSD9 589 aaKnown RBP8.61□□□□□ -1.03
USP40-203ENST00000427112 DNAJB4Q9UDY4 337 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.61□□□□□ -1.03
USP40-203ENST00000427112 BCAP29Q9UHQ4 241 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 MID2Q9UJV3 735 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 TRHDEQ9UKU6 1024 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 CORINQ9Y5Q5 1042 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 TARM1B6A8C7 271 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 H0Y626 953 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 H3BNH8 94 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 GSTA4O15217 222 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 CD3EAPO15446 510 aaKnown RBP8.6□□□□□ -1.03
USP40-203ENST00000427112 TRIM16O95361 564 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 KCNK10P57789 538 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 DDX39BQ13838 428 aaKnown RBP8.6□□□□□ -1.03
USP40-203ENST00000427112 NR6A1Q15406 480 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 SAMD4BQ5PRF9 694 aaKnown RBP8.6□□□□□ -1.03
USP40-203ENST00000427112 ZFP1Q6P2D0 407 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 LINC00523Q86TU6 105 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 PGBD5Q8N414 524 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 EGFL8Q99944 293 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 RTP3Q9BQQ7 232 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 STN1Q9H668 368 aaKnown RBP8.6□□□□□ -1.03
USP40-203ENST00000427112 EML4Q9HC35 981 aaKnown RBP8.6□□□□□ -1.03
USP40-203ENST00000427112 PRDM5Q9NQX1 630 aaPredicted RBP8.6□□□□□ -1.03
USP40-203ENST00000427112 ADARB2Q9NS39 739 aaKnown RBP8.6□□□□□ -1.03
USP40-203ENST00000427112 LIMD1Q9UGP4 676 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 ZNF232Q9UNY5 417 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 PHF24Q9UPV7 400 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 POLR3HQ9Y535 204 aaPredicted RBP8.6□□□□□ -1.03
USP40-203ENST00000427112 E5RI56 91 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 NDUFB5O43674 189 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 STRNO43815 780 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 NDUFS3O75489 264 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 AQP1P29972 269 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 MERTKQ12866 999 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 DNASE1L3Q13609 305 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 SQLEQ14534 574 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 RAB39AQ14964 217 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 ZNF678Q5SXM1 525 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 GCNT7Q6ZNI0 430 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 SCD5Q86SK9 330 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 METTL23Q86XA0 190 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 AHI1Q8N157 1196 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 TCF12Q99081 682 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 DNAI2Q9GZS0 605 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 CNGB3Q9NQW8 809 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 RASSF1Q9NS23 344 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 VTI1BQ9UEU0 232 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 MATN1P21941 496 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 PRKAA2P54646 552 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 ZXDBP98169 803 aa8.6□□□□□ -1.03
USP40-203ENST00000427112 FRG1Q14331 258 aaKnown RBP8.6□□□□□ -1.03
USP40-203ENST00000427112 CYP27C1Q4G0S4 372 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms