RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 TUBB1Q9H4B7 451 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 SP140LQ9H930 580 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 MOV10Q9HCE1 1003 aaKnown RBP10.66□□□□□ -0.7
USP54-204ENST00000422491 NECTIN3Q9NQS3 549 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 SBF1O95248 1867 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 ZNF99A8MXY4 864 aaPredicted RBP10.65□□□□□ -0.7
USP54-204ENST00000422491 TTC34A8MYJ7 566 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 PPP6CO00743 305 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 CAPN15O75808 1086 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 CDK14O94921 469 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 CD40LGP29965 261 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 SERPINB1P30740 379 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 NKX2-5P52952 324 aaPredicted RBP10.65□□□□□ -0.7
USP54-204ENST00000422491 ADAM17P78536 824 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 ADIGQ0VDE8 80 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 RCAN2Q14206 197 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 DGUOKQ16854 277 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 LY6KQ17RY6 165 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 FUT11Q495W5 492 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 ZNF484Q5JVG2 852 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 CATSPEREQ5SY80 951 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 PROSER1Q86XN7 944 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 LACC1Q8IV20 430 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 PPHLN1Q8NEY8 458 aaKnown RBP10.65□□□□□ -0.7
USP54-204ENST00000422491 DYNC2LI1Q8TCX1 351 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 FAR1Q8WVX9 515 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 WNT8BQ93098 351 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 ZNF486Q96H40 463 aaPredicted RBP10.65□□□□□ -0.7
USP54-204ENST00000422491 TEX37Q96LM6 180 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 NODALQ96S42 347 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 GPR20Q99678 358 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 TBL1YQ9BQ87 522 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 FEM1AQ9BSK4 669 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 SLAMF8Q9P0V8 285 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 GPR45Q9Y5Y3 372 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 EVPLQ92817 2033 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 A0A087WZ62 844 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 SLC1A7O00341 560 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 PSMD3O43242 534 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 WISP3O95389 354 aaPredicted RBP10.65□□□□□ -0.7
USP54-204ENST00000422491 MT-CYBP00156 380 aaPredicted RBP10.65□□□□□ -0.7
USP54-204ENST00000422491 CHRNA1P02708 482 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 HGFP14210 728 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 LBPP18428 481 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 CHRNA5P30532 468 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 NR4A2P43354 598 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 HCAR3P49019 387 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 OR4D2P58180 307 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 HERVK_113P63132 956 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 NFKB2Q00653 900 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 FSCN1Q16658 493 aaKnown RBP10.65□□□□□ -0.7
USP54-204ENST00000422491 KANK2Q63ZY3 851 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 KIAA0930Q6ICG6 404 aaPredicted RBP10.65□□□□□ -0.7
USP54-204ENST00000422491 PJA1Q8NG27 643 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 SLC2A14Q8TDB8 520 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 CAPSLQ8WWF8 208 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 SLC9A7Q96T83 725 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 ERVK-6Q9BXR3 956 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 NACA2Q9H009 215 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 ALG9Q9H6U8 611 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 POLG2Q9UHN1 485 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 ZNF229Q9UJW7 825 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 STAP1Q9ULZ2 295 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 PCDHGB1Q9Y5G3 927 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 SNX5Q9Y5X3 404 aa10.65□□□□□ -0.7
USP54-204ENST00000422491 M0R3G1 203 aa10.65□□□□□ -0.71
USP54-204ENST00000422491 TULP3O75386 442 aa10.65□□□□□ -0.71
USP54-204ENST00000422491 EEDO75530 441 aaKnown RBP10.65□□□□□ -0.71
USP54-204ENST00000422491 PTPRAP18433 802 aa10.65□□□□□ -0.71
USP54-204ENST00000422491 EDNRBP24530 442 aa10.65□□□□□ -0.71
USP54-204ENST00000422491 LMO2P25791 158 aa10.65□□□□□ -0.71
USP54-204ENST00000422491 EIF2DP41214 584 aaKnown RBP10.65□□□□□ -0.71
USP54-204ENST00000422491 PPP5CP53041 499 aa10.65□□□□□ -0.71
USP54-204ENST00000422491 DIO3P55073 304 aa10.65□□□□□ -0.71
USP54-204ENST00000422491 EMX1Q04741 257 aaPredicted RBP10.65□□□□□ -0.71
USP54-204ENST00000422491 SCAPQ12770 1279 aa10.65□□□□□ -0.71
USP54-204ENST00000422491 SLC13A2Q13183 592 aa10.65□□□□□ -0.71
USP54-204ENST00000422491 KYAT1Q16773 422 aa10.65□□□□□ -0.71
USP54-204ENST00000422491 TMEM236Q5W0B7 351 aa10.65□□□□□ -0.71
USP54-204ENST00000422491 TMEM207Q6UWW9 146 aa10.65□□□□□ -0.71
USP54-204ENST00000422491 PLPPR4Q7Z2D5 763 aa10.65□□□□□ -0.71
USP54-204ENST00000422491 KRT27Q7Z3Y8 459 aa10.65□□□□□ -0.71
USP54-204ENST00000422491 ISCA2Q86U28 154 aa10.65□□□□□ -0.71
USP54-204ENST00000422491 CCDC117Q8IWD4 279 aaPredicted RBP10.65□□□□□ -0.71
USP54-204ENST00000422491 CRYBG2Q8N1P7 616 aa10.65□□□□□ -0.71
USP54-204ENST00000422491 CLIP4Q8N3C7 705 aa10.65□□□□□ -0.71
USP54-204ENST00000422491 LILRB4Q8NHJ6 448 aa10.65□□□□□ -0.71
USP54-204ENST00000422491 NTAN1Q96AB6 310 aa10.65□□□□□ -0.71
USP54-204ENST00000422491 ZNF419Q96HQ0 510 aaPredicted RBP10.65□□□□□ -0.71
USP54-204ENST00000422491 TP63Q9H3D4 680 aaPredicted RBP10.65□□□□□ -0.71
USP54-204ENST00000422491 WDR6Q9NNW5 1121 aaKnown RBP10.65□□□□□ -0.71
USP54-204ENST00000422491 SLCO3A1Q9UIG8 710 aa10.65□□□□□ -0.71
USP54-204ENST00000422491 AAR2Q9Y312 384 aaKnown RBP10.65□□□□□ -0.71
USP54-204ENST00000422491 TESMINQ9Y4I5 508 aa10.65□□□□□ -0.71
USP54-204ENST00000422491 COL4A5P29400 1685 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 PLXNA1Q9UIW2 1896 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 ILVBLA1L0T0 632 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 AZIN1O14977 448 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 SOAT2O75908 522 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 CES1P23141 567 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms