RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 HIC2Q96JB3 615 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 LMAN2LQ9H0V9 348 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 CD248Q9HCU0 757 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 CCDC177Q9NQR7 707 aaPredicted RBP17.2■□□□□ 0.34
PHRF1-202ENST00000413872 STMN3Q9NZ72 180 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 NDRG2Q9UN36 371 aaKnown RBP17.2■□□□□ 0.34
PHRF1-202ENST00000413872 CHURC1-FNTBB4DL54 471 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 EDF1O60869 148 aaKnown RBP17.2■□□□□ 0.34
PHRF1-202ENST00000413872 HNRNPCP07910 306 aaKnown RBP eCLIP17.2■□□□□ 0.344e-7■■■■□ 23.1
PHRF1-202ENST00000413872 RPIAP49247 311 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 MRPS22P82650 360 aaKnown RBP17.2■□□□□ 0.34
PHRF1-202ENST00000413872 CARD16Q5EG05 197 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 TAF8Q7Z7C8 310 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 ZSCAN18Q8TBC5 510 aaPredicted RBP17.2■□□□□ 0.34
PHRF1-202ENST00000413872 KLHL32Q96NJ5 620 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 SLC38A2Q96QD8 506 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 PRDM8Q9NQV8 689 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 RPL26L1Q9UNX3 145 aaKnown RBP17.2■□□□□ 0.34
PHRF1-202ENST00000413872 PCDHGA4Q9Y5G9 962 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 SMIM31A0A1B0GVY4 71 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 GABRDO14764 452 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 CLDN9O95484 217 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 EPHA3P29320 983 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 MANFP55145 182 aaKnown RBP17.19■□□□□ 0.34
PHRF1-202ENST00000413872 STX4Q12846 297 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 KIAA0930Q6ICG6 404 aaPredicted RBP17.19■□□□□ 0.34
PHRF1-202ENST00000413872 C8orf59Q8N0T1 100 aaPredicted RBP17.19■□□□□ 0.34
PHRF1-202ENST00000413872 FCRL5Q96RD9 977 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 HOPXQ9BPY8 73 aaPredicted RBP17.19■□□□□ 0.34
PHRF1-202ENST00000413872 CCDC28BQ9BUN5 200 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 ABCB8Q9NUT2 735 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 TRPS1Q9UHF7 1281 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 NRXN3Q9Y4C0 1643 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 RASGRP1O95267 797 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 ALPPL2P10696 532 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 GRIA3P42263 894 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 DLK2Q6UY11 383 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 SERPINA9Q86WD7 417 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 DEPDC4Q8N2C3 294 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 C1orf50Q9BV19 199 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 LRTM1Q9HBL6 345 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 DNM1LO00429 736 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 SLC6A2P23975 617 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 DLG2Q15700 870 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 COMMD2Q86X83 199 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 PROSER1Q86XN7 944 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 CELF5Q8N6W0 485 aaKnown RBP17.19■□□□□ 0.34
PHRF1-202ENST00000413872 ZNF248Q8NDW4 579 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 SPATA22Q8NHS9 363 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 PHF10Q8WUB8 498 aaKnown RBP17.19■□□□□ 0.34
PHRF1-202ENST00000413872 SPOCK2Q92563 424 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 EXO5Q9H790 373 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 TRIM24O15164 1050 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 PSMG1O95456 288 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 CD48P09326 243 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 ITPKAP23677 461 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 TAF5Q15542 800 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 TAF13Q15543 124 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 SULT1C3Q6IMI6 304 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 ADGRD1Q6QNK2 874 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 NEK10Q6ZWH5 1172 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 PARGQ86W56 976 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 KIAA2013Q8IYS2 634 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 SCAMP5Q8TAC9 235 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 RAD51AP1Q96B01 352 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 WRAP53Q9BUR4 548 aaKnown RBP17.19■□□□□ 0.34
PHRF1-202ENST00000413872 RAB11FIP5Q9BXF6 653 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 ZSCAN32Q9NX65 697 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 DTLQ9NZJ0 730 aa17.19■□□□□ 0.34
PHRF1-202ENST00000413872 ZNF490Q9ULM2 529 aaPredicted RBP17.19■□□□□ 0.34
PHRF1-202ENST00000413872 A0A087WXM4 84 aa17.18■□□□□ 0.34
PHRF1-202ENST00000413872 A0A1W2PPM1 405 aa17.18■□□□□ 0.34
PHRF1-202ENST00000413872 A0A1W2PRU2 124 aa17.18■□□□□ 0.34
PHRF1-202ENST00000413872 BMP7P18075 431 aa17.18■□□□□ 0.34
PHRF1-202ENST00000413872 GPR33Q49SQ1 333 aa17.18■□□□□ 0.34
PHRF1-202ENST00000413872 ADGRG2Q8IZP9 1017 aa17.18■□□□□ 0.34
PHRF1-202ENST00000413872 MOSPD2Q8NHP6 518 aa17.18■□□□□ 0.34
PHRF1-202ENST00000413872 CENPIQ92674 756 aaPredicted RBP17.18■□□□□ 0.34
PHRF1-202ENST00000413872 MARK4Q96L34 752 aa17.18■□□□□ 0.34
PHRF1-202ENST00000413872 TEFMQ96QE5 360 aaKnown RBP17.18■□□□□ 0.34
PHRF1-202ENST00000413872 SSU72Q9NP77 194 aaKnown RBP17.18■□□□□ 0.34
PHRF1-202ENST00000413872 POLR3HQ9Y535 204 aaPredicted RBP17.18■□□□□ 0.34
PHRF1-202ENST00000413872 CCNFP41002 786 aa17.18■□□□□ 0.34
PHRF1-202ENST00000413872 BUD31P41223 144 aaPredicted RBP17.18■□□□□ 0.34
PHRF1-202ENST00000413872 GPR17Q13304 367 aa17.18■□□□□ 0.34
PHRF1-202ENST00000413872 NAE1Q13564 534 aa17.18■□□□□ 0.34
PHRF1-202ENST00000413872 TMC5Q6UXY8 1006 aa17.18■□□□□ 0.34
PHRF1-202ENST00000413872 BCO2Q9BYV7 579 aa17.18■□□□□ 0.34
PHRF1-202ENST00000413872 ENO4A6NNW6 628 aa17.18■□□□□ 0.34
PHRF1-202ENST00000413872 HMGB3O15347 200 aaKnown RBP17.18■□□□□ 0.34
PHRF1-202ENST00000413872 TRBC1P01850 177 aa17.18■□□□□ 0.34
PHRF1-202ENST00000413872 TSPAN19P0C672 248 aa17.18■□□□□ 0.34
PHRF1-202ENST00000413872 RFX4Q33E94 735 aa17.18■□□□□ 0.34
PHRF1-202ENST00000413872 CIR1Q86X95 450 aaPredicted RBP17.18■□□□□ 0.34
PHRF1-202ENST00000413872 OFCC1Q8IZS5 231 aa17.18■□□□□ 0.34
PHRF1-202ENST00000413872 ZNF516Q92618 1163 aa17.18■□□□□ 0.34
PHRF1-202ENST00000413872 IL12RB2Q99665 862 aa17.18■□□□□ 0.34
PHRF1-202ENST00000413872 TMEM109Q9BVC6 243 aa17.18■□□□□ 0.34
PHRF1-202ENST00000413872 MAGEL2Q9UJ55 1249 aa17.18■□□□□ 0.34
PHRF1-202ENST00000413872 SCML2Q9UQR0 700 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms