RNA–Protein interactions for RNA: ENST00000413409.6

PTPRC-206, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best) BASIC

Gene PTPRC, Length 1,338 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-206ENST00000413409 RFWD3Q6PCD5 774 aa17.1■□□□□ 0.33
PTPRC-206ENST00000413409 CMC1Q7Z7K0 106 aa17.1■□□□□ 0.33
PTPRC-206ENST00000413409 DENND1CQ8IV53 801 aa17.1■□□□□ 0.33
PTPRC-206ENST00000413409 LMNTD2Q8IXW0 634 aa17.1■□□□□ 0.33
PTPRC-206ENST00000413409 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.1■□□□□ 0.33
PTPRC-206ENST00000413409 IL17RCQ8NAC3 791 aa17.1■□□□□ 0.33
PTPRC-206ENST00000413409 HMGB4Q8WW32 186 aa17.1■□□□□ 0.33
PTPRC-206ENST00000413409 LRRC37BQ96QE4 947 aa17.1■□□□□ 0.33
PTPRC-206ENST00000413409 MYLK2Q9H1R3 596 aa17.1■□□□□ 0.33
PTPRC-206ENST00000413409 ZDHHC4Q9NPG8 344 aa17.1■□□□□ 0.33
PTPRC-206ENST00000413409 UBA2Q9UBT2 640 aaPredicted RBP17.1■□□□□ 0.33
PTPRC-206ENST00000413409 RIMKLBQ9ULI2 386 aa17.1■□□□□ 0.33
PTPRC-206ENST00000413409 APOBEC2Q9Y235 224 aaKnown RBP17.1■□□□□ 0.33
PTPRC-206ENST00000413409 MGAQ8IWI9 3026 aa17.1■□□□□ 0.33
PTPRC-206ENST00000413409 CEP192Q8TEP8 1941 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 A0A096LPK6 155 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 KDELR3O43731 214 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 DNAJC6O75061 913 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 H2AFYO75367 372 aaKnown RBP17.09■□□□□ 0.33
PTPRC-206ENST00000413409 KLF8O95600 359 aaPredicted RBP17.09■□□□□ 0.33
PTPRC-206ENST00000413409 KLKB1P03952 638 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 SERPINE1P05121 402 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 RHOCP08134 193 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 DLDP09622 509 aaKnown RBP17.09■□□□□ 0.33
PTPRC-206ENST00000413409 FGF3P11487 239 aaPredicted RBP17.09■□□□□ 0.33
PTPRC-206ENST00000413409 COL6A2P12110 1019 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 GRK2P25098 689 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 ITPKBP27987 946 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 ARFIP2P53365 341 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 OXCT1P55809 520 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 MRPS21P82921 87 aaKnown RBP17.09■□□□□ 0.33
PTPRC-206ENST00000413409 USP4Q13107 963 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 STX3Q13277 289 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 CAMK2BQ13554 666 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 SMAD1Q15797 465 aaKnown RBP17.09■□□□□ 0.33
PTPRC-206ENST00000413409 FAM91A1Q658Y4 838 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 GLRX5Q86SX6 157 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 CRLF3Q8IUI8 442 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 SLC41A1Q8IVJ1 513 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 RFWD2Q8NHY2 731 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 PIP4K2CQ8TBX8 421 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 RDH11Q8TC12 318 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 ERP27Q96DN0 273 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 ACE2Q9BYF1 805 aaPredicted RBP17.09■□□□□ 0.33
PTPRC-206ENST00000413409 THAP1Q9NVV9 213 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 TOR4AQ9NXH8 423 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 KCNK4Q9NYG8 393 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 CAMSAP3Q9P1Y5 1249 aaPredicted RBP17.09■□□□□ 0.33
PTPRC-206ENST00000413409 KIAA1522Q9P206 1035 aaPredicted RBP17.09■□□□□ 0.33
PTPRC-206ENST00000413409 AGO1Q9UL18 857 aaKnown RBP17.09■□□□□ 0.33
PTPRC-206ENST00000413409 TBC1D30Q9Y2I9 924 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 PTPRQQ9UMZ3 2332 aa17.09■□□□□ 0.33
PTPRC-206ENST00000413409 ATMQ13315 3056 aa17.08■□□□□ 0.33
PTPRC-206ENST00000413409 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.08■□□□□ 0.32
PTPRC-206ENST00000413409 MROH6A6NGR9 719 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 HNRNPCL1O60812 293 aaKnown RBP17.08■□□□□ 0.32
PTPRC-206ENST00000413409 ADAM23O75077 832 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 UNC5CO95185 931 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 VAPBO95292 243 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 C2P06681 752 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 CES1P23141 567 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 CD151P48509 253 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 RPL6Q02878 288 aaKnown RBP17.08■□□□□ 0.32
PTPRC-206ENST00000413409 ACVR1Q04771 509 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 OVGP1Q12889 678 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 ZNF177Q13360 481 aaPredicted RBP17.08■□□□□ 0.32
PTPRC-206ENST00000413409 GRM3Q14832 879 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 SIRPB2Q5JXA9 342 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 C16orf46Q6P387 395 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 CFAP52Q8N1V2 620 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 SLC25A41Q8N5S1 370 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 SREK1Q8WXA9 508 aaKnown RBP17.08■□□□□ 0.32
PTPRC-206ENST00000413409 MRPS31Q92665 395 aaKnown RBP17.08■□□□□ 0.32
PTPRC-206ENST00000413409 SKA1Q96BD8 255 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 THOC1Q96FV9 657 aaKnown RBP17.08■□□□□ 0.32
PTPRC-206ENST00000413409 ZFRQ96KR1 1074 aaKnown RBP17.08■□□□□ 0.32
PTPRC-206ENST00000413409 PSKH2Q96QS6 385 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 SEMA3CQ99985 751 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 TMEM120AQ9BXJ8 343 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 PRORYQ9H606 182 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 SAR1AQ9NR31 198 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 TMEM216Q9P0N5 145 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 COPG2Q9UBF2 871 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 SLC2A6Q9UGQ3 507 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 GGT7Q9UJ14 662 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 PCOLCE2Q9UKZ9 415 aa17.08■□□□□ 0.32
PTPRC-206ENST00000413409 C2orf78A6NCI8 922 aa17.07■□□□□ 0.32
PTPRC-206ENST00000413409 SLC7A4O43246 635 aa17.07■□□□□ 0.32
PTPRC-206ENST00000413409 RASSF9O75901 435 aa17.07■□□□□ 0.32
PTPRC-206ENST00000413409 MBL2P11226 248 aaPredicted RBP17.07■□□□□ 0.32
PTPRC-206ENST00000413409 CRABP2P29373 138 aa17.07■□□□□ 0.32
PTPRC-206ENST00000413409 TIE1P35590 1138 aa17.07■□□□□ 0.32
PTPRC-206ENST00000413409 SLC1A2P43004 574 aa17.07■□□□□ 0.32
PTPRC-206ENST00000413409 SLC6A11P48066 632 aa17.07■□□□□ 0.32
PTPRC-206ENST00000413409 PRKAA2P54646 552 aa17.07■□□□□ 0.32
PTPRC-206ENST00000413409 RPS24P62847 133 aaKnown RBP17.07■□□□□ 0.32
PTPRC-206ENST00000413409 NSUN2Q08J23 767 aaKnown RBP eCLIP17.07■□□□□ 0.32
PTPRC-206ENST00000413409 IHHQ14623 411 aa17.07■□□□□ 0.32
PTPRC-206ENST00000413409 CNGA3Q16281 694 aa17.07■□□□□ 0.32
PTPRC-206ENST00000413409 TTC31Q49AM3 519 aaPredicted RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms